Query= MSMg01no154_d11.b1 MSMg01no154_d11.b1 CHROMAT_FILE:
MSMg01no154_d11.b1 PHD_FILE: MSMg01no154_d11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:47 2005
(634 letters)
>mm_chr5_89782811_89783844
Length = 1034
Score = 1120 bits (579), Expect = 0.0
Identities = 618/637 (97%), Gaps = 11/637 (1%)
Strand = Plus / Minus
Query: 1 ataggtcacctaaagtgactggctgaggaacaatctgtctagcttcaaggtgaaatctaa 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 952 ataggtcacctaaagtgactggctgaggaacaatctgtctagctttaaggtgaaatctaa 893
Query: 61 agaaaacagacaataacaatttatgaccaaaaaaaaa---aaaaaaaaaaaaaccaaaaa 117
||||||||||||||||||||||||||||||||||||| || ||| ||||||
Sbjct: 892 agaaaacagacaataacaatttatgaccaaaaaaaaacccaagaaa--------caaaaa 841
Query: 118 acaaaatcaagcaattaccaaggaactaaaaaatgagcaattcctagagctaaaactgta 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 acaaaatcaagcaattaccaaggaactaaaaaatgagcaattcctagagctaaaactgta 781
Query: 178 ccagaaactacttgaattccattcagcctcaactgagagattttgctgaaggtgcaaagc 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 ccagaaactacttgaattccattcagcctcaactgagagattttgctgaaggtgcaaagc 721
Query: 238 ttgcactgaactgtggcaaggccataactaaggagaggaaacaaattaaaccctagaacc 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 ttgcactgaactgtggcaaggccataactaaggagaggaaacaaattaaaccctagaacc 661
Query: 298 aaagctactctgtattcaaccaaaataagcaagcttcaaagtagaactttaggtaatcaa 357
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 660 aaagctactctgtattcaaccaaaataaacaagcttcaaagtagaactttaggtaatcaa 601
Query: 358 actaatctaccagagacttaactttctttaagcaaaactcaaaactatctgactaccaac 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 actaatctaccagagacttaactttctttaagcaaaactcaaaactatctgactaccaac 541
Query: 418 aagtcagagagtgttttagatgtacaaacaagggaagaagacaaatgaccggaacattgt 477
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 540 aagtcagagagtgttttagatgtacaaacaagggaagaagacaaatgactggaacattgt 481
Query: 478 cagtgaaaatgtatagagagcaataaagatttaactagagatctaaaacttacaatgttt 537
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 480 cagttaaaatgtatagagagcaataaagatttaactagagatctaaaacttacactgttt 421
Query: 538 tatattttctctgcttacaaagggatagaaataatttcccttagaaaaacgataaaagta 597
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 420 tatattttctctgcttacaaagggatagtaataatttcccttagaaaaatgataaaagta 361
Query: 598 atagaagatatataaaaagcaaatggaatgtttagaa 634
|||||||||||||||||||||||||||||||||||||
Sbjct: 360 atagaagatatataaaaagcaaatggaatgtttagaa 324
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space: 638976
Effective search space used: 638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no154_d11.g1 MSMg01no154_d11.g1 CHROMAT_FILE:
MSMg01no154_d11.g1 PHD_FILE: MSMg01no154_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:47 2005
(574 letters)
>mm_chr5_89621995_89622968
Length = 974
Score = 1094 bits (566), Expect = 0.0
Identities = 572/574 (99%)
Strand = Plus / Plus
Query: 1 tgtgtttgttttctgtccatgtagtgttggctttataccattgaatgagatacttcagag 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgtttgctttctgtccatgtagtgttggctttataccattgaatgagatacttcagag 260
Query: 61 aataaatattaatgtcattttttaaagggcaatgcatttatataaaaactgtgtgaacta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aataaatattaatgtcattttttaaagggcaatgcatttatataaaaactgtgtgaacta 320
Query: 121 caagaatcagaagggagcaagagatgcagtttgctaagtcacaccaaaggactgttttgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caagaatcagaagggagcaagagatgcagtttgctaagtcacaccaaaggactgttttgg 380
Query: 181 gaggtttggctagtttatattcttttgaatattgtcaacggcagcaaattgttttccctt 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 gaggtttggctagtttatattcttttgaatattgtcaacagcagcaaattgttttccctt 440
Query: 241 tgagtatggatttagctttctacattagccagagtcatttgtatgttaggtagagtgaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgagtatggatttagctttctacattagccagagtcatttgtatgttaggtagagtgaaa 500
Query: 301 ttggcaagtcgatattacattctggatggtaatttggcattatgtccccaaagccttaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttggcaagtcgatattacattctggatggtaatttggcattatgtccccaaagccttaaa 560
Query: 361 tttttatatacacatcgacaggaaattctgctcacagtaatttattccaaataaatagcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttttatatacacatcgacaggaaattctgctcacagtaatttattccaaataaatagcc 620
Query: 421 ccaagtgcttgcaaatatttctttataatattttttcatggtctagaaaagttgggagtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccaagtgcttgcaaatatttctttataatattttttcatggtctagaaaagttgggagtg 680
Query: 481 acctaaatacaaggatattaggaaaaatgatctttgtataactgttcagtgtaatacttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acctaaatacaaggatattaggaaaaatgatctttgtataactgttcagtgtaatacttt 740
Query: 541 gacattattaaggttgctgttacagaaaacatca 574
||||||||||||||||||||||||||||||||||
Sbjct: 741 gacattattaaggttgctgttacagaaaacatca 774
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space: 543696
Effective search space used: 543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
