Query= MSMg01no154_f21.b1 MSMg01no154_f21.b1 CHROMAT_FILE:
MSMg01no154_f21.b1 PHD_FILE: MSMg01no154_f21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:59 2005
(543 letters)
>mm_chr5_43764833_43765775
Length = 943
Score = 791 bits (409), Expect = 0.0
Identities = 418/421 (99%)
Strand = Plus / Minus
Query: 123 tgactattactggaaacaggacctttatgtggataattaaagtaaaagaaagtaattaga 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 943 tgactattactggaaacaggacctttatgtggataattaaagtaaaagaaagtaattaga 884
Query: 183 atgggtcatttcctggatggaaaaacagaagtgcaggcacgttgaaaggctaaattgtgt 242
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 883 atgggtcatttcctggatggaaaaacagaagtgcaggcacgttgaaaggccaaattgcgt 824
Query: 243 aaggacacagggagaaaagagactcttataagataggaagagaagcctcggcagaaacaa 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 aaggacacagggagaaaagagactcttataagataggaagagaagcctcggcagaaacaa 764
Query: 303 atctcccaacatcctaacctagccttcatggagaagacactgcaatattgatgagcatac 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 atctcccaacatcctaacctagccttcatggagaagacactgcaatattgatgagcatac 704
Query: 363 ttaaaccattgcagaagccatgttgtatgagcacctgaagttctactaccctcttcccac 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 ttaaaccattgcagaagccatgttgtatgagcacctgaagttctactaccctcttcccac 644
Query: 423 ctgtgatgcttcctttacttggcttgtgttcctccatcaaaaagtcattgcttctctcaa 482
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 643 ctgtgatgcttcctttacttgggttgtgttcctccatcaaaaagtcattgcttctctcaa 584
Query: 483 gtgacttcttcatatgagtctttccttcagtggacaaggacttagtaatgtgacatatgt 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 gtgacttcttcatatgagtctttccttcagtggacaaggacttagtaatgtgacatatgt 524
Query: 543 g 543
|
Sbjct: 523 g 523
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no154_f21.g1 MSMg01no154_f21.g1 CHROMAT_FILE:
MSMg01no154_f21.g1 PHD_FILE: MSMg01no154_f21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:59 2005
(482 letters)
>mm_chr5_43588944_43589824
Length = 881
Score = 909 bits (470), Expect = 0.0
Identities = 479/482 (99%), Gaps = 1/482 (0%)
Strand = Plus / Plus
Query: 1 tcctattgaggatttttggtgctgctagtattattttgttagtttgagattattgtagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctattgaggatttttggtgctgctagtattattttgttagtttgagattattgtagtt 260
Query: 61 ttcagttttaaaagttgttttatttatttatttttttgtagttcctgttcctttgtgagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcagttttaaaagttgttttatttatttatttttttgtagttcctgttcctttgtgagc 320
Query: 121 attatttttatttccctttatttaaagcatgttccagtcactcagtgaaacattttatac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attatttttatttccctttatttaaagcatgttccagtcactcagtgaaacattttatac 380
Query: 181 aatagcctctttaggtttctcttcatttgaatggagaggatggaaaaatattgtcagtat 240
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 a-tagcctctttaggtttctcttcatttgaatggagaggatggaaaaatattgtcagtat 439
Query: 241 actgaaagaaataacaataaaagttgccacagaacagagagaaaatgacataagagaaag 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 actgaaagaaagaacaataaaagttgccacagaacagagagaaaatgacataagagaaag 499
Query: 301 aaacttggaggcaagggacttcatgactaaaataaaggctctaacatttatgttgacaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aaacttggaggcaagggacttcatgactaaaataaaggctctaacatttatgttgacaga 559
Query: 361 atagagaaaaaacttgactaaactaaaactgtagtgactggaagctttctgaagactgac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atagagaaaaaacttgactaaactaaaactgtagtgactggaagctttctgaagactgac 619
Query: 421 ataaccatcatcttgctgtcaatatgtcattatctttgtccacttatgtgatattttctt 480
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ataaccattatcttgctgtcaatatgtcattatctttgtccacttatgtgatattttctt 679
Query: 481 gg 482
||
Sbjct: 680 gg 681
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 881
Length adjustment: 10
Effective length of query: 472
Effective length of database: 871
Effective search space: 411112
Effective search space used: 411112
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
