CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAACTCAGGAACACTGAACGCCTGAGAAGCACCTAAAAAGTGTTT
AGCATCCTTTATCATCAGGGAAATGCAAATCAAAACAACCCTGAAATTCC
ACTTCATACCAGTCAGAATGGCTGAGATCAAAACTCAGGTGGCAGCAGAT
GCTGACAAGGAAAGAGGAACACTCCTCCATTGCTGGTGGGACTGCAAGCT
GGTACAAGCAATCTGGAAATCAGTTTGTTGGTTCCTCAGAAAATTGGACA
TATTTCTCCTGGAAGATCCAGCAATACTACTCTTGGGCATATAACCAGAA
TGTGCTCCAACATATAAGAAGGACACATGTTCCACTATGTTCATAGCAGC
CTTATTTATAATAGCTAAAAGCTAGAAACAACACAGATGTTCCTCAACAG
AGGAATAGATACAGAAAATGTGGTACATTTACACAATTGAGTACTACTCA
GCTATTAAAATCAATACATTCATGAAATTCTTATACTAATGGATGTATTT
GGAGGATATCATCCTTAGTGAGGTAACCCAATCACAAAAGAACACGTTTG
ATATGTACTCATTGATGAGTGGATATTAGCCCAGAAGCTCAGAATTCTTC
TTAGAATGGGGAACAAAATACCCCTGGAAAGAGTAACAGAAACAAA

GGGGNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACTCATACTGGTAGGCTG
CATGCCCAGCCGTAGATGCTCAACAGAAAATGAACTCAAACACTGTCATT
TAAAGTTCTTTGTTTCACAGTGTTAAATCGGGGCTTTTTTTTGTTGTTTG
TTTGTTTTTTTTTTTTTTTTGTTGTTCTTGAATTTTACAAGTCTTTCATG
TATATTTTATGACCTCTGGTACCAGGTTTGAATGGAATTCCTGTGTGTGC
AGATGTGTTTCCACATCTGTAGTGTTTCTGGTGCTTTTTCTTTGAATCCT
TTTATTTATTTATTTTTTGTTCTATTCTGATTTGTTTGACTTTACTTAAT
TTATTTTATTATTATGTCTTAGGTGACTGCTTTCTAACAAGACAGAGATA
GTTGTTGGATCTGGATGGGAGAAGTTGGAAGGAAATGATAGGAGTATAGG
CATACAGAATGTATACTGAAAATATCATAAAAAACATTTACATTCGACAA
CTACATGATTTTATTTTCCACTATAATACTATTGCATAATTCAACCTACT
TTTATTCTCTTTTGATAACAAGCTTCACATGATTTTTGTTTGCTATTTTT
TGCACATTTCTTTATTTTCCTTTTAAACCTACCTTGTTCTTTTTCACTTT
TAACTTCATC

Query= MSMg01no154_i20.g1 MSMg01no154_i20.g1 CHROMAT_FILE:
MSMg01no154_i20.g1 PHD_FILE: MSMg01no154_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:13 2005
         (381 letters)



>mm_chr5_56447419_56448202
          Length = 784

 Score =  661 bits (342), Expect = 0.0
 Identities = 378/402 (94%), Gaps = 21/402 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcactcatactggtaggctgcatgcccagccgtagatgctcaacagaaaatgaactcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 tcactcatactggtaggctgcatgcccagccgtagatgctcaacagaaaatgaactcaaa 242

                                                                       
Query: 61  cactgtcatttaaagttctttgtttcacagtgttaaatcggggc--ttttttttgttgtt 118
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||
Sbjct: 243 cactgtcatttaaagttctttgtttcacagtgttaaatcggggcttttttttttgatgtt 302

                                                                       
Query: 119 tgtttg------------tttttttttttttt-------ttgttgttcttgaattttaca 159
           ||||||            ||||||||||||||       |||||||||||||||||||||
Sbjct: 303 tgtttggttcttttttttttttttttttttttgttgttgttgttgttcttgaattttaca 362

                                                                       
Query: 160 agtctttcatgtatattttatgacctctggtaccaggtttgaatggaattcctgtgtgtg 219
           ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 363 agtctttcatgtatattttttgacctctggtaccaggtttgaatgaaattcctgtgtgtg 422

                                                                       
Query: 220 cagatgtgtttccacatctgtagtgtttctggtgctttttctttgaatccttttatttat 279
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 cagatgtgtttccacatctgtagtgtttctggtgctttttctttgaatccttttatttat 482

                                                                       
Query: 280 ttattttttgttctattctgatttgtttgactttacttaatttattttattattatgtct 339
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ttattttttgttctattctgatttgtttgactttacttaatttattttattattatgtct 542

                                                     
Query: 340 taggtgactgctttctaacaagacagagatagttgttggatc 381
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 taggtgactgctttctaacaagacagagatagttgttggatc 584


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 784
Length adjustment: 9
Effective length of query: 372
Effective length of database: 775
Effective search space:   288300
Effective search space used:   288300
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)