BAC Information

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BAC

Clone NameMSMg01-154J06
Chromosome5 (Build37)
Map Location 15,184,987 - 15,185,649
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik
Downstream geneSpeer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154J06.T7 (MSMg01no154_j06.b1)MSMg01-154J06.TJ (MSMg01no154_j06.g1)
ACCAG355832AG355833
length712711
length of high quality
(start - end)
668 (45 - 712)626 (75 - 700)
definitionCHROMAT_FILE: MSMg01no154_j06.b1 PHD_FILE: MSMg01no154_j06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:14 2005CHROMAT_FILE: MSMg01no154_j06.g1 PHD_FILE: MSMg01no154_j06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:15 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCTAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCG
GAATTCACCAGGATTCACAAGAGCCCAAAAGGCAGAGGAGAAGTGTTCAT
GGGTGCACTAGCCAGTTACCTCTGGAAGAACAGCTGCATGGATTCAGGAT
GCACTTCATGCACACTGGGTGCGATGCTGGATGGCTGTGGAAAGTCATCT
CTTACTAAGTCCTAATCAAAATGCTTCTAGAGAACTCCACACTGAGTCAG
TGCTTTCTGTTCCCAAGCAAACCACAGCACTGATCTCCATCTGTTTTTCT
CTGACTCTTAAAACATCCTTCCAAATTGAAAAACAAAGCACAAGATCATC
TTAATTGCCTTGCCAAAGGATTGGAAAGGAGCACCACTTTTCGTTCAGAA
GACAACTTCAGAAAACAAAAGAGAAGCCTCAAATGGGCCAAAAGCCACAA
ATTGAAAAACAAAAGAAAAACAAGGCTGACTGTCTACTGCCAGCAGGAGT
TCACCAGGGAGAGGAGCTCTGACTCCAAAATAGTCACTTTTCCATTTTGT
CAATGATGGCAAAAGGCCATGGGTGCTGGCTAAAGGAAGGAAAGGATGTT
CCAGGAAGAAAACAGGTCTCTTTGTTGCAAGAATTGCATTCTCACTTGTA
TCCAATGCTGATAACTGGCAGCAGAAACTCTGAGAGGGTCACATCTATGT
GGTGACACAAGA
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTAGGTCTGCAGCAGGGGACAGAACAC
CTGAATAAGGAAGATGGTCTCACAGAGTCACTACTTGCAAATCAATTTTT
ATTCATAAGAAATAGAATTTTTAAAAAATAGGTTTTAAAAGTTCAATTAA
TATAGAGATAAAGGCAAAAACAAACAATGAAATACAAGAACAAGAACATA
TAACTTCTAAATAACATAACAATAACTCAAAGAACAAAAATAAAAACTTA
AACCAAAACTCTAAAGGAAAATTATTGTTCAGCTGCTTTTGCTTTCTGCA
CTTTTAGCAGCACAGCCCTCCAGCTTACTGCTCCTCTCGGATACTAGGTA
TCAGTGCAGCCGCCTCAGTTCTCTGCCAAGAGACGTTGTCTGAAGAGAAA
AGGGAACAACGCCCTGAATCAGCCATGGCTTCCTAGTAAAGGCCTATTCA
CCCTAAGAAAATGAATTATATGGAAGAAGATTCATCCGAGAAAGATTGTG
GGTGCTGGAGATGGTGCTCAGCAGGGGCCTCCTGGCCTGGCAACTCATTC
TGCAGGATGCTGTCTTCTTCAGCTGTGGCCAATCCCAGCTCTCTTGCAGT
TTCTGAGACCTGGGAGAGGAAGGCAGTTACTAAGACACAGGAGTGGAGGA
GACAGGCATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_j06.b1 MSMg01no154_j06.b1 CHROMAT_FILE:
MSMg01no154_j06.b1 PHD_FILE: MSMg01no154_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:14 2005
         (668 letters)



>mm_chr5_15184781_15185849
          Length = 1069

 Score = 1145 bits (592), Expect = 0.0
 Identities = 645/666 (96%), Gaps = 7/666 (1%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcaccag----gattcacaagagcccaaaaggcagaggagaagtgttcatgggtgc 62
           |||||||||||    ||   ||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 gaattcaccaggaaaga---acaagagcccaaaaggcagaggagaagtgttcatgggtgc 813

                                                                       
Query: 63  actagccagttacctctggaagaacagctgcatggattcaggatgcacttcatgcacact 122
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 812 actagccagttacctctggaagagcagctgcatggattcaggatgcacttcatgcacact 753

                                                                       
Query: 123 gggtgcgatgctggatggctgtggaaagtcatctcttactaagtcctaatcaaaatgctt 182
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 gggtgccatgctggatggctgtggaaagtcatctcttactaagtcctaatcaaaatgctt 693

                                                                       
Query: 183 ctagagaactccacactgagtcagtgctttctgttcccaagcaaaccacagcactgatct 242
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 692 ctagagaactccacactgagtcagggctttctgttcccaagcaaaccacagcactgatct 633

                                                                       
Query: 243 ccatctgtttttctctgactcttaaaacatccttccaaattgaaaaacaaagcacaagat 302
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 632 ccatctgtttttctctgactcttaagacatccttccaaattgaaaaacaaagcacaaaat 573

                                                                       
Query: 303 catcttaattgccttgccaaaggattggaaaggagcaccacttttcgttcagaagacaac 362
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 572 catcttaattgccttgccaaaggattggaaaggagcaccactttttgttcagaagacaac 513

                                                                       
Query: 363 ttcagaaaacaaaagagaagcctcaaatgggccaaaagccacaaattgaaaaacaaaaga 422
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 512 ttcagaaaacaaaagagaagcctcaaacgggccaaaagccacaaattgaaaaacaaaaga 453

                                                                       
Query: 423 aaaacaaggctgactgtctactgccagcaggagttcaccagggagaggagctctgactcc 482
           |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 452 aaaacaaggctggctgtctactgccagcaggcgttcaccagggagaggagctctgactcc 393

                                                                       
Query: 483 aaaatagtcacttttccattttgtcaatgatggcaaaaggccatgggtgctggctaaagg 542
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 aaaatagtcactttaacattttgtcaatgatggcaaaaggccatgggtgctggctaaagg 333

                                                                       
Query: 543 aaggaaaggatgttccaggaagaaaacaggtctctttgttgcaagaattgcattctcact 602
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 332 aaggaaaggatgttccaggaagaaaacaggtctctttgttgcaagaactgcattctcact 273

                                                                       
Query: 603 tgtatccaatgctgataactggcagcagaaactctgagagggtcacatctatgtggtgac 662
           |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 272 tgtatccaatgctgataactggcagcagaaactctgggagggtcacatatatgtggtgac 213

                 
Query: 663 acaaga 668
           ||||||
Sbjct: 212 acaaga 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1069
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1059
Effective search space:   696822
Effective search space used:   696822
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)