BAC Information

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BAC

Clone NameMSMg01-154J16
Chromosome5 (Build37)
Map Location 31,329,408 - 31,329,753
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039369, Il6, Tyms, EG242914, Gm444, Hadha, Hadhb, Gpr113, EG384325, D5Wsu178e, Gm1060, Otof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23
Downstream geneSlc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154J16.T7 (MSMg01no154_j16.b1)MSMg01-154J16.TJ (MSMg01no154_j16.g1)
ACCAG355850AG355851
length703718
length of high quality
(start - end)
346 (66 - 411)286 (65 - 350)
definitionCHROMAT_FILE: MSMg01no154_j16.b1 PHD_FILE: MSMg01no154_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:17 2005CHROMAT_FILE: MSMg01no154_j16.g1 PHD_FILE: MSMg01no154_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAATXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAAAGAGGATCCGCGG
AATTCAAAGGTTCCTGAAAGGACTTTTTTAAATGATAAGGCCAGAGTTAA
CAATAACTTGAAGCAGAAAAGATGTCGTTCCTTCTTCTGATTTATTTATC
CATTTAGAGACAGAGTCTCACTGTGTAGCATGCCTGGCACGGGACTCACA
GAGCCCATCTGCTTTTGCTTCCTGTGAGCTTTACTCCTGCTTTGAGTAAT
AAAGATATCTTTAAGGCTTGATAAAGAATGTCTCAGCTTGGTTTTTCGTT
TGTTTTCTTGTTTTACATTTCTTAACTGGGGGTGAGCGGTGTGGGCACAT
GTGGAGGCCAGAGAGCATCTTACATGAGCTGGTTCCCTCGGCTACCACAC
AGGTCTTGGGAATCAAACTCAGACACTGAGTCTTGGCTGCAAGATCGGGT
GTTCCAAGTACTAGGATTAAAGGCATGTGCCACCATGTCCAGCCCGAACT
TTTGTTTTACTTCAGGTTCTCTTAAGATTACAGATAGGTTGTGTATGCTC
TAAACGTTTCTTATCAAACGGGCTGACTTTGATTTGCCCCACTCCCAAAG
AATGACCATCATTTTATTCTTTTCACTACCCAGCATTCGATCAGGCTTCA
TTTCTACTCCCCTTTCCATTTTTCCGGGCCCCTCCCGACCCCCTTTTTCC
TCT
ATGTAGTGAGAGGCCTGGAGGCCGCCTTTCAAAAAAGTTAGGTGAACTAT
AGATTTCCACGCGGAATTCTCCTTTAATCCCAGCAAGGGTAGCCAGTCTC
TGTAAATTTAAAGGCCAGCCTGGTATACATTTGAGTTCCAAGACAGCTAG
GGTTACAGAGTGAGACCTTATTTCAAAAACAACTTCTGGAGTCGGAGAGG
TGGGTCAGCGGTTAAGAGCAGGGGCTGTTTTTCCAGAGGACCTGTGTTAG
ATACGCAGCACCCATGTGGTGGCTCACACCCATCTGTAACTCTAGTCTCA
GGCCCTCTTCTGATCTCAGGTACCAGGCATGCTTGTGATATACATACACA
AAAACAAAGTACACTTACACATAATAGCTGGACGTCCTGACACTGCCTTT
AATCCCAGCACTCTGGAGGCAAAGGCAAGATCTCCCAATTTTGAGGCCAG
CCTGGTCTATACGAAAATTCCAGGATTACATAAAGAAACACTGTCTCAAA
AGTTAACACCTAAATAACTATAATTTATCCGCGAAAACATAGCCGGGTGG
TGTTGTATCTTGCCCTTTACATCCTACCTCTTGGAAATCATCATTTTTGC
GTCTTTTCTCATCCCCGTCCCTTTTCCGCTTTTCCTTTCCCCCTATTATT
ACCCCCTTTACACCAATCGTATAACCCTCTTTCCACTCCCATATTTTCAC
TCTCCCCCTTACCCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_j16.b1 MSMg01no154_j16.b1 CHROMAT_FILE:
MSMg01no154_j16.b1 PHD_FILE: MSMg01no154_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:17 2005
         (346 letters)



>mm_chr5_31329208_31329953
          Length = 746

 Score =  669 bits (346), Expect = 0.0
 Identities = 346/346 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaaggacttttttaaatgataaggccagagttaacaataacttgaagcagaaaagatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaaaggacttttttaaatgataaggccagagttaacaataacttgaagcagaaaagatgt 260

                                                                       
Query: 61  cgttccttcttctgatttatttatccatttagagacagagtctcactgtgtagcatgcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgttccttcttctgatttatttatccatttagagacagagtctcactgtgtagcatgcct 320

                                                                       
Query: 121 ggcacgggactcacagagcccatctgcttttgcttcctgtgagctttactcctgctttga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcacgggactcacagagcccatctgcttttgcttcctgtgagctttactcctgctttga 380

                                                                       
Query: 181 gtaataaagatatctttaaggcttgataaagaatgtctcagcttggtttttcgtttgttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtaataaagatatctttaaggcttgataaagaatgtctcagcttggtttttcgtttgttt 440

                                                                       
Query: 241 tcttgttttacatttcttaactgggggtgagcggtgtgggcacatgtggaggccagagag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcttgttttacatttcttaactgggggtgagcggtgtgggcacatgtggaggccagagag 500

                                                         
Query: 301 catcttacatgagctggttccctcggctaccacacaggtcttggga 346
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catcttacatgagctggttccctcggctaccacacaggtcttggga 546


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space:   248369
Effective search space used:   248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)