Query= MSMg01no154_k15.b1 MSMg01no154_k15.b1 CHROMAT_FILE:
MSMg01no154_k15.b1 PHD_FILE: MSMg01no154_k15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:21 2005
(529 letters)
>mm_chr5_38804960_38805889
Length = 930
Score = 953 bits (493), Expect = 0.0
Identities = 505/509 (99%), Gaps = 1/509 (0%)
Strand = Plus / Plus
Query: 22 atagccgctaattc-ttcatatctccataggtgtggctctaagtggacatgatggtcata 80
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 atagctgctaattcattcatatctccataggtgtggctctaagtggacatgatggtcata 281
Query: 81 atatcatgatggtcacatgctcctgctgggatgggagagagctgggttcttctgcagttc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 atatcatgatggtcacatgctcctgctgggatgggagagagctgggttcttctgcagttc 341
Query: 141 tacctccgtccctgcgtgacctggacaatcacatgacagcagtatatatgtggctgtcct 200
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 342 tacctccgtccctgcgtgacctggacagtcacatgacagcagtatatatgtggctgtcct 401
Query: 201 caagaaggaattagaatgagcaccacagagacagaactggtaaactcccagagggccact 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 caagaaggaattagaatgagcaccacagagacagaactggtaaactcccagagggccact 461
Query: 261 ctgagctgggacacatgtgtagattgctcctgatgaatgacagccacaggaggattgagc 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ctgagctgggacacatgtgtagattgctcctgatgaatgacagccacaggaggattgagc 521
Query: 321 aagagcactggcctcctccctggtctgcgtgtgctcgatccagccatacatgttcataca 380
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 aagagcactggcctcctccctggtctgcgtgtgctcgatccagccatacatgttcatacg 581
Query: 381 tgtagcatcaacctaactgcacacagtccacagttatcctcacctggctcatatcaatca 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tgtagcatcaacctaactgcacacagtccacagttatcctcacctggctcatatcaatca 641
Query: 441 tctccccacccactcagatgtcacctcctccaggaagctcttcccaagctccctgttatc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 tctccccacccactcagatgtcacctcctccaggaagctcttcccaagctccctgttatc 701
Query: 501 acctctttggaactcagggcttctcttca 529
|||||||||||||||||||||||||||||
Sbjct: 702 acctctttggaactcagggcttctcttca 730
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 930
Length adjustment: 10
Effective length of query: 519
Effective length of database: 920
Effective search space: 477480
Effective search space used: 477480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no154_k15.g1 MSMg01no154_k15.g1 CHROMAT_FILE:
MSMg01no154_k15.g1 PHD_FILE: MSMg01no154_k15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:22 2005
(538 letters)
>mm_chr5_38896777_38897713
Length = 937
Score = 758 bits (392), Expect = 0.0
Identities = 413/420 (98%), Gaps = 2/420 (0%)
Strand = Plus / Minus
Query: 1 ctatgttaatttttgtgaatggaatggcactgtctgctgtcctgaaatattggcctgtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ctatgttaatttttgtgaatggaatggcactgtctgctgtcctgaaatattggcctgtgg 359
Query: 61 tgcagaggaaccagggtagaaccatcagcttttgttccaggagctcgtgggcctggagag 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 358 tgcagaggaaccagggtagaaccatcagcttttgttccaggagctcttgggcctggagag 299
Query: 121 agcggaaaataatgtgcggtcccagtgataagccacatacgttagggaagttttccccag 180
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 298 agcggaaaataatgtgcggtcccagtgatatgccacatacgttaggga-gttttccccag 240
Query: 181 tgtagaagatggagggcgggacaccaagaagagagctgggctaggcctgtggcacagacc 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 tgtggaagatggagggcgggacaccaagaagagagctgggctaggcctgtggcacagacc 180
Query: 241 atcactattcaggaggctggagtaggaggttcatgagctccgggccagcctgggccacat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 atcactattcaggaggctggagtaggaggttcatgagctccgggccagcctgggccacat 120
Query: 301 atttcctactgtctcaaaaaaactaaggaagtgggggagggaagagagagggctgtgcct 360
||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||
Sbjct: 119 atttcctactgtctcaaaaca-ctaaggaagtgggggagggaagagagaggcctgtgcct 61
Query: 361 cagggtgtgatgacagagataaactgaactcagcagttagacacaaaactctcttgtttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 cagggtgtgatgacagagataaactgaactcagcagttagacacaaaactctcttgtttt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 937
Length adjustment: 10
Effective length of query: 528
Effective length of database: 927
Effective search space: 489456
Effective search space used: 489456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
