BAC Information

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BAC

Clone NameMSMg01-155C12
Chromosome5 (Build37)
Map Location 101,531,104 - 101,531,355
singlet/doubletsinglet
Overlap genenone
Upstream geneBC062109, LOC666417, Sec31a, LOC100041797, Lin54, Cops4, Plac8, Coq2, Hpse, Hel308, Mrps18c, Ccdc98, A230097K15Rik
Downstream geneLOC100041888, LOC100040902, Cycs-ps2, LOC100040920, Nkx6-1, Cds1, Wdfy3, EG666515, EG666527
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155C12.T7 (MSMg01no155_c12.b1)MSMg01-155C12.TJ (MSMg01no155_c12.g1)
ACCAG356251AG356252
length745755
length of high quality
(start - end)
248 (74 - 321)249 (68 - 316)
definitionCHROMAT_FILE: MSMg01no155_c12.b1 PHD_FILE: MSMg01no155_c12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:00 2005CHROMAT_FILE: MSMg01no155_c12.g1 PHD_FILE: MSMg01no155_c12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATGAGGATCCGCGGAA
TTCTCACCTTTTACTTAACAATTTTCAATAATTTGATTGTGACAATACCT
TAGCATGGCTTTCTTGACCTTGCCGTTTACCCCTTCTGAGGTCTGCTGAA
CTGGGGTCTTATGTATCACTGCTCTGATCACATTTGGTTTTTTTCATCCA
TTATTTCTTCAAGGAAATTCTCTTTCCTTTCTTTCTGGGGTTCAATCACT
AAAGAACATTTTTGATGCCTTAGGTGTCTTTGTTTTCTTTCTTTCTCTGA
TCACTGCAGTGAGATAATTTAATTTATATTTGCCAAAATTTTGTTGATGC
CTTTCCCTCTCTCTCTCAATTTTACACCTATCTAAAACGTGAGTTTCTAA
CCATTCATTTTCCATTTAAACCTTCCACTGCTTTTCCAGAGCTTGCGTTC
CCATGGCTACTTATCCGTATGGTGATGTTGAAGGACCTTCCCATTGCCGT
ATCTCTTTACTGTCACGCCATACCATACTCTTATATCTTATGTTCACCTT
TACCTTTCCAATGATGACTACTCGGAAATTTATTTTTATGTACCTGACGT
ATTCTGTCATACGATTCCCACATTTCCCATTCGCCTGTAACACCCTATAC
CATGCGATACCCCTACCCTGTTTTATTTACTTGCCCATTACCTACTGCCC
CTTTTTTATGCTGTTTGCTCGCACCTCTGCCCTTATTACCCCTTG
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATTTTCACTGGAGACCATTGCTGGGACTTGCAT
CTGGGGTAAAGTCATTGCCTGTATTTTTTTTTAAATCATGCTTATTTGTA
CAGTAGAAATATTTTCAGTATCCAGGAGAGAAGAGCTGTAGAAGTGTTGA
AATGTTGTTTTCCCCAGCCAGATTGCAGGCCTGGCTTAGTAGCTACACCT
TCAGTCCAGGTGTTGAGGAAAAAGGCTTCAATTCCCACTACTATTCTGAA
TGTATAATACTGTCTGTATAAAGAGTCTCCTTCCCAGGGTCTTACAACAG
TAACCACCATATGAAAGACTATCACCCGGTCAGCTCTAGCCATTTAGGAA
GGATAGTAAGGACACAATAGACTACCACTCTTTGCTAATATTGTCGCAGT
TGAGACAAAGCACAGAAAGGAAATGTAGACAGACGTATGTTTGGGCCCAA
GTGCCCATAGATTACGCTCACCTGTCTCGATATGTAGTGACCTTTTGATC
GAGTTGAACCGACCCTTCGATGTATACCACCCCCCACTTCTCTATTCTTG
CCATTCCCCTTTTTTTTTTTGACCCCTGTTCCTTCTTATCCCCTCCCGAT
TGTCCCCTTTTTTCCCCTTCCTTTTTACCCCCCCCCCTTTTTTCCCATTG
TATTCTCCAGAAACCATTTTTTACCCCTTTCCTATTATCCCTTTTTAACC
CCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_c12.g1 MSMg01no155_c12.g1 CHROMAT_FILE:
MSMg01no155_c12.g1 PHD_FILE: MSMg01no155_c12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:00 2005
         (249 letters)



>mm_chr5_101530904_101531555
          Length = 652

 Score =  449 bits (232), Expect = e-131
 Identities = 246/252 (97%), Gaps = 3/252 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   attttcactggagaccattgctgggacttgcatctggggtaaagtcattgcctgtatttt 60
           |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 201 attttcactggagaccattgctgggacttgtatctggggtaaagtcattggctgtatttt 260

                                                                       
Query: 61  ttttt---aaatcatgcttatttgtacagtagaaatattttcagtatccaggagagaaga 117
           |||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttttttaaatcatgcttatttgtacagtagaaatattttcagtatccaggagagaaga 320

                                                                       
Query: 118 gctgtagaagtgttgaaatgttgttttccccagccagattgcaggcctggcttagtagct 177
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 gctgtagaagtgttgaaatgttgttttccccagccagattgcgggcctggcttagtagct 380

                                                                       
Query: 178 acaccttcagtccaggtgttgaggaaaaaggcttcaattcccactactattctgaatgta 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaccttcagtccaggtgttgaggaaaaaggcttcaattcccactactattctgaatgta 440

                       
Query: 238 taatactgtctg 249
           ||||||||||||
Sbjct: 441 taatactgtctg 452


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 652
Length adjustment: 9
Effective length of query: 240
Effective length of database: 643
Effective search space:   154320
Effective search space used:   154320
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)