BAC Information

Click to search

BAC

Clone NameMSMg01-156B22
Chromosome5 (Build37)
Map Location 76,163,202 - 76,163,859
singlet/doubletsinglet
Overlap genenone
Upstream geneEG619945, Chic2, Gsh2, LOC100039083, Olfr1401-ps1, Pdgfra, LOC100039125, LOC100039143, LOC100039158, LOC100039169, Kit, EG664874
Downstream geneKdr, Gabarapl2-ps5_758.1, Srd5a2l, Tmem165, Apc-ps1, Clock, Ube2n-ps1, EG665055, Pdcl2, Pafah1b1-ps3, Nmu, LOC665065, EG639545, Exoc1, Cep135, LOC100039117, A730089K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156B22.T7 (MSMg01no156_b22.b1)MSMg01-156B22.TJ (MSMg01no156_b22.g1)
ACCAG356940AG356941
length750751
length of high quality
(start - end)		669 (46 - 714)633 (77 - 709)
definitionCHROMAT_FILE: MSMg01no156_b22.b1 PHD_FILE: MSMg01no156_b22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:10 2005CHROMAT_FILE: MSMg01no156_b22.g1 PHD_FILE: MSMg01no156_b22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCGGGAGTGCTGTCAATCTTGAGTGTAGAGAAGACAAGTGGAGGC
ACGGAGTGAAAAGCCATGCTTCCTGTATCAGTCAGGAGTATCAGTTATGC
TTCAGTAACAAATGAATCCAGAACCCAGCAGCTCAATACAGTGAACGTTT
ATACTTTTTCACATCCTCTGTGTATTTACAGGCCAATCAGCAATCCTGCT
ACATCTAGCCATTCAGACTCTTTGGTTGACAGACACGCCTCTGTTCTAAT
CTGTTCCAACTGCAGTGTGCAGATGGCTCCCTGGTCCCATGGCCAGAAGA
CAGAAGCCCAGATAATCATGTCTGAGCCCCTCACTAACTCAGCCTGTAAG
TAGTAAAGGCTACTCCTACTCGCGCCTCTATGCCCAGAAACAGTCAAATG
GCTTAACGCAATTGCAAGATGGTTAATAAGGGGGCAAAGTTCCAAGCTTC
CAGAGAGAACTGGATATGGATGGAGCCAATAATCTTAATTACCCACTTCC
CACAACTTCCTCCTTCTCACAAATGAAGAAGTCACTTGACAAATCATCCT
GTAACCAAGTAGAACCCATGTTCTTGTCAGCTCTTCAAAAGGGACCTTTG
ACTGTACAAGGTCACCTAACACCACCTCATCTCTCCTCTTCTTTAAGTCA
ATCAACACAAGTTACAGTGTGAAGCTAATAGATCAGTTTTGGTGTGAACA


CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAG
AAGGACACATGCTCCACTATGTTCACACCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGAAACTCACACAATATGTATTCACTGATAA
GTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAATTTG
CTAAACACATGAAACTCAAGAAGAATGAAGACTGAAGTGTGNACACTATG
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_b22.b1 MSMg01no156_b22.b1 CHROMAT_FILE:
MSMg01no156_b22.b1 PHD_FILE: MSMg01no156_b22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:10 2005
         (669 letters)



>mm_chr5_76163062_76164130
          Length = 1069

 Score = 1201 bits (621), Expect = 0.0
 Identities = 651/665 (97%), Gaps = 7/665 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcgggagtgctgtcaatcttgagtgtagagaagacaagtggaggcacggagtga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 gaattctcgggagtgctgtcaatcttgagtgtagagaagacaagtggaggcacggagtga 739

                                                                       
Query: 65  aaagccatgcttcctgtatcagtcaggagtatcagttatgcttcagtaacaaatgaatcc 124
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 aaagctatgcttcctgtatcagtcaggagtatcagttatgcttcagtaacaaatgaatcc 679

                                                                       
Query: 125 agaacccagcagctcaatacagtgaacgtttatactttttcacatcctctgtgtatttac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 agaacccagcagctcaatacagtgaacgtttatactttttcacatcctctgtgtatttac 619

                                                                       
Query: 185 aggccaatcagcaatcctgctacatctagccattcagactctttggttgacagacacgcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 618 aggccaatcagcaatcctgctacatctagccattcagactctttggttgacagacactcc 559

                                                                       
Query: 245 tctgttctaatctgttccaactgcagtgtgcagatggctccctggtcccatggccagaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tctgttctaatctgttccaactgcagtgtgcagatggctccctggtcccatggccagaag 499

                                                                       
Query: 305 acagaagcccagataatcatgtctgagcccctcactaactcagcctgtaagtagtaaagg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 498 acagaagcccagataatcatgtctgagcccctcactaactcagcctgtaagtaataaagg 439

                                                                       
Query: 365 ctactcctactcgcgcctctatgcccagaaacagtcaaatggcttaacgcaattgcaaga 424
           ||||||||||| | |  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ctactcctacttgtgtttctatgcccagaaacagtcaaatggcttaacgcaattgcaaga 379

                                                                       
Query: 425 tggttaataagggggcaaagttccaagcttccagagagaactggatatggatggagccaa 484
           |       ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 t-------aagggggcaaagttccaagcttccagagagaactggatatggatggagccaa 326

                                                                       
Query: 485 taatcttaattacccacttcccacaacttcctccttctcacaaatgaagaagtcacttga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taatcttaattacccacttcccacaacttcctccttctcacaaatgaagaagtcacttga 266

                                                                       
Query: 545 caaatcatcctgtaaccaagtagaacccatgttcttgtcagctcttcaaaagggaccttt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caaatcatcctgtaaccaagtagaacccatgttcttgtcagctcttcaaaagggaccttt 206

                                                                       
Query: 605 gactgtacaaggtcacctaacaccacctcatctctcctcttctttaagtcaatcaacaca 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gactgtacaaggtcacctaacaccacctcatctctcctcttctttaagtcaatcaacaca 146

                
Query: 665 agtta 669
           |||||
Sbjct: 145 agtta 141


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space:   697881
Effective search space used:   697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |