BAC Information

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BAC

Clone NameMSMg01-156E08
Chromosome5 (Build37)
Map Location 122,023,344 - 122,023,626
singlet/doubletsinglet
Overlap geneAldh2
Upstream geneTpcn1, Iqcd, 1110008J03Rik, Ddx54, LOC546886, Rasal1, Dtx1, Oas2, Oas3, Oas1e, Oas1c, Oas1b, Oas1f, Oas1h, Oas1g, Oas1a, Oas1d, Oas1i, Rph3a, LOC665299, Ptpn11, Rpl6, LOC100039686, EG545802, AU042671, Trafd1, C330023M02Rik, Erp29, Tmem116, Adam1b, Adam1a, Mapkapk5
Downstream gene9330129D05Rik, Acad10, Brap, Atxn2, Sh2b3, A230106M15Rik, Cutl2, LOC100042693, Myl2, Ccdc63, Ppp1cc, Hvcn1, Tect1, Pptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7, Atp2a2, Ift81
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156E08.T7 (MSMg01no156_e08.b1)MSMg01-156E08.TJ (MSMg01no156_e08.g1)
ACCAG357053AG357054
length746745
length of high quality
(start - end)
319 (46 - 364)286 (76 - 361)
definitionCHROMAT_FILE: MSMg01no156_e08.b1 PHD_FILE: MSMg01no156_e08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:21 2005CHROMAT_FILE: MSMg01no156_e08.g1 PHD_FILE: MSMg01no156_e08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTCTGAGTAGATAGCTACGCCTGTCACTCTGCCTCTTGCTCATT
ATCATGTCAAGTATCATTTTTCTTGTTGTTTGTTTGTTTTGTTTCTTTGA
GACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCAGTTTGTAGC
CTAGGCTGGCCTCACAGAGATCTACTTGCCTCTGCCTCTCAAGTGTTGGG
ATTAAAGGTGCCCCCACCACCACCACACACACAGTGAATTTCCTTTTATT
AGCTCATACTTTCACCCTTTTTTTTTCCTTTGGTTTTTCTGAGACAGGGT
TTTTCTATGTATTCTTGGCTGCCCCGCACCTCACTCTGTAGACCAGACTG
GCCTCGAACTCAAAATCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAA
GGCGTGTGCCACCATTCCCGGCCACCCTTTTAAAATAGTGGTTGGGTCAT
AGTTTAATGTTCAGGTTTGAGGTTGCCAGAGTAGAAATTCAAGTATTCGG
ACATAAGTAAATAGTAAATTTAGCATTATCATCATCATCATCCTGTCATT
ATTGTGAATACTTGCTTTTTAAATGAACGATATGATTGCTTCTTTGTTTG
TTTGTCTTTTGAAAACTCCAAAACNGGGGTTCTCTGGGCTCTACAGCCTA
CCTAAAAAAAATTTTTATGTGAGTGGGTCTAATATTTAGGGGCTGC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTGGGTCTCTTGGGACCCAGGGACT
GCGTGTATGGAGCATCTAGCTTCCTTCCCCCTGCTAACAGCAGTCCATGG
TGTCTGTGTCTCCGCAGGTTGGTCACCTAATCCAGGTAGCCGCCGGGAGC
AGCAACCTCAAGAGAGTAACCCTGGAGCTGGGGGGAAAGAGTCCCAACAT
CATCATGTCCGACGCTGACAGTAAGTTCCAGGGGTTGCAGCGAGGCCTCG
GCTCCAGTGGGATTGGTTTGGGGCCCGTGTGGTCTGGTGTTGACCTTTCT
CCGTAGTATTTATTTGTTCTGCCACTTACCGCCAGCCTGAGCCCTGTACT
GCCCACGCACAGGCCCCTAGGCCACCATACCTCAGCACGTCCTCTCTACG
AGACACTTCCTTTCCTCTGTCTCTTTCTTTAAAAAAAAAAAAAAATATAT
ATATATATATATTTATTTATTTATTTTATGTACACTGTGGCTCACACTGT
AGCTGTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTAAACTC
AGGACCTTCGGAAGAGCAGTCAGTGCTATTAACAATTAAACCATCTCTCC
AGCCCCTCTTCTGTCTCTTTCACAAATGATGGTCTTCACCAAGGGAAAAG
GGTTCTGTTCCATTCTGAGCAAGAATTGTACCCAGGGAGGAATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_e08.g1 MSMg01no156_e08.g1 CHROMAT_FILE:
MSMg01no156_e08.g1 PHD_FILE: MSMg01no156_e08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:22 2005
         (286 letters)



>mm_chr5_122023144_122023829
          Length = 686

 Score =  470 bits (243), Expect = e-137
 Identities = 273/283 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgggtctcttgggacccagggactgcgtgtatggagcatctagcttccttccccctgct 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 483 ttgggtctcttgggacccagggactgcgtgtgtggagcatctagcttccttccccctgct 424

                                                                       
Query: 61  aacagcagtccatggtgtctgtgtctccgcaggttggtcacctaatccaggtagccgccg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 423 aacagcagtccatggtgtctgtgtctccgcaggttggtcacctaatccaggtggccgccg 364

                                                                       
Query: 121 ggagcagcaacctcaagagagtaaccctggagctggggggaaagagtcccaacatcatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ggagcagcaacctcaagagagtaaccctggagctggggggaaagagtcccaacatcatca 304

                                                                       
Query: 181 tgtccgacgctgacagtaagttccaggggttgcagcgaggcctcggctccagtgggattg 240
           |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 303 tgtccgacgctgacagtaagttccgggggctgcagcgaggcctcggctccagtgggattg 244

                                                      
Query: 241 gtttggggcccgtgtggtctggtgttgacctttctccgtagta 283
           |||||||||| ||||||||||   ||||||| ||||| |||||
Sbjct: 243 gtttggggcctgtgtggtctgacattgacctctctccatagta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)