BAC Information

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BAC

Clone NameMSMg01-156F21
Chromosome5 (Build37)
Map Location 21,857,864 - 21,858,180
singlet/doubletsinglet
Overlap genenone
Upstream geneFgl2, AI847670, Fbxl13, LOC625004, LOC667253, Armc10, AB112350, Pmpcb, Dnajc2, Psmc2, Slc26a5, Reln, Dnaja1-ps
Downstream geneLOC100041982, Orc5l, LOC100042049, LOC668232, LOC100042067, LOC671222, LOC625174, Lhfpl3, EG625219, LOC100042101, LOC100042082
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156F21.T7 (MSMg01no156_f21.b1)MSMg01-156F21.TJ (MSMg01no156_f21.g1)
ACCAG357127AG357128
length727749
length of high quality
(start - end)
325 (23 - 347)289 (73 - 361)
definitionCHROMAT_FILE: MSMg01no156_f21.b1 PHD_FILE: MSMg01no156_f21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:29 2005CHROMAT_FILE: MSMg01no156_f21.g1 PHD_FILE: MSMg01no156_f21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTATTCTTACTTAAATGTA
TATAGTATATTAAAACTGTTAATGAACATTTCTGAAATTCTAAGCTATAG
TTAAGGTATGGAATAAAAGCTGGAAAGGAAAGGATCTGACATTGTCTCTT
ACATCTTATCTTCAAATATGTTGAATATTCTCAAGGCAGTTTGGTGAAAT
TTTAAAACTGCCTTCAAATTCTTTTAGAGATACATGATATCTATAAATTG
TTTTCTCCTACTGTTCAGTTGACTTGAGCTGCTTTGCCATTTTCACAGAC
ATCATTGCTAGGTAGCTTTTAAAATTCTGTACAGTCTCATTTGTTTATCA
GAACTCACACACTTTTTTGGCTATAACTAAGCAGACCTTAACTCAGCTCC
ACCTTGATCAAAAAGTGATTTATTGATTATGAATACTGAAAAGCCCAGAG
AACGATTTACCGTAATCACAGCTGAGGAAGATTAACCTGTACACACAGCT
GACATCATGTTGCCAGGTTCTGGATCTCTTCTTATTTCTCTTTCCTTGAA
TGACACAGGTCTCAGGCAGACCCTGGCATGTGGTAGCCCCTGGCAAATCC
AGACTTGTTTTATCGTTAGCGGATTGAATCTGATGGAGCCATCCAAGAGT
CAAAACAGTTGGTATGATAGAAGTGCCCATTGTCCCAGTCTGGGGTGTCA
TCCTAGACCTAGTGCAAGAACTTGAGA
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAAGCTCAGGGTCGGCTTCTAGGATTGC
CTGGGACATTGGAACACTGAGGAAGGCTTAGCTATATGTCAAAATCAATC
CTAAAAGGCACTTATATTAAAACAATATTGAAAGAGAGCACACGGATCCA
TACACCAGACTAACATGAGGACAGGTTTTGAGTATATGGGCTATGGGAAT
GCCAAGGTTCCAAGAGGCAAAGTTTCATTGGAACTCTTTGCCTCGTGACT
GCTTCCAGGCTTTCAGGCCTGTCATGCGCGTCACTACTGGAGTAGATGTA
GCAACCACCAATATGGTATGGCCCGCCCCCCGCCGAAACACTGGATAAAA
CAATGAAATAAATAATGTGCGCCCACTTGAACAGAAAATCCCAGTGTTGG
GGAGGGGACAACAGGGACTCAATAGCTAGCCAGTCTAAAGTTATTGTTAA
GCTCCAAGCCAAAGCAGACCAATAAGAGATACTTTCTCAATGGAGAAAGA
TGGATTTCCTGAGGACAACATCTGAGAGTGTGCTCTGGTCTCAACAGGAG
CACATATGCTTCTGCACACACACACATACGTACCCTAACCCATGCATGCT
TGTGCACATCTTATTCACACACATACACAAATCATAATTTGAAAGCCTCG
CTTGAACCCCTGTCCTCTATAGAAAACAATCATGAGCCTTTGTCAGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_f21.b1 MSMg01no156_f21.b1 CHROMAT_FILE:
MSMg01no156_f21.b1 PHD_FILE: MSMg01no156_f21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:29 2005
         (325 letters)



>mm_chr5_21857660_21858384
          Length = 725

 Score =  582 bits (301), Expect = e-171
 Identities = 313/317 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctattcttacttaaatgtatatagtatattaaaactgttaatgaacatttctgaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctattcttacttaaatgtatatagtatattaaaactgttaatgaacatttctgaa 264

                                                                       
Query: 65  attctaagctatagttaaggtatggaataaaagctggaaaggaaaggatctgacattgtc 124
           |||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||
Sbjct: 265 attctaagctatagttaaggtatggaatgaaagctagaaaggaaaggatgtgacattgtc 324

                                                                       
Query: 125 tcttacatcttatcttcaaatatgttgaatattctcaaggcagtttggtgaaattttaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcttacatcttatcttcaaatatgttgaatattctcaaggcagtttggtgaaattttaaa 384

                                                                       
Query: 185 actgccttcaaattcttttagagatacatgatatctataaattgttttctcctactgttc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 actgccttcaaattcttttagagatacatgatatctataaattgttttctcctactgttc 444

                                                                       
Query: 245 agttgacttgagctgctttgccattttcacagacatcattgctaggtagcttttaaaatt 304
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aattgacttgagctgctttgccattttcacagacatcattgctaggtagcttttaaaatt 504

                            
Query: 305 ctgtacagtctcatttg 321
           |||||||||||||||||
Sbjct: 505 ctgtacagtctcatttg 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)