BAC Information

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BAC

Clone NameMSMg01-156J11
Chromosome5 (Build37)
Map Location 86,033,593 - 86,033,905
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156J11.T7 (MSMg01no156_j11.b1)MSMg01-156J11.TJ (MSMg01no156_j11.g1)
ACCAG357292AG357293
length722720
length of high quality
(start - end)
319 (46 - 364)284 (76 - 359)
definitionCHROMAT_FILE: MSMg01no156_j11.b1 PHD_FILE: MSMg01no156_j11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:46 2005CHROMAT_FILE: MSMg01no156_j11.g1 PHD_FILE: MSMg01no156_j11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTCAGCAAAGTAGTTTATTTTCAGAGCTCGAGGCTGCGTTCATT
TCTTTTATAGAATGCTTGTGTGTGAATAATGGTTGTCTAATTGTCAGATG
GAGAGCACGTCATCCTATTTCCAGATGGATGATTCCAGTCACCTGAAGGA
TCACCCATCCACTGGTTAATTTGGGCTCTTGGTTCCTTTAGTATTTCTAG
CAAGCAGTACAGGCAATGTATTGTTCATAGTCATTTATCTTTAAAGTGAT
ATTAGATGACACCTTCTGCTGATATTCCTCAACTTATGATGGGGTTACAT
CCCAATAAAGTCTATGTAAATCACAAAGGTGGTCACAATTACATTATGTA
CGTGTTTAAAATATCATACCACAATCTAGTATTTTAGATAACCTGTTTAT
AGCAAGGCCAAAAATTTTAAAATGCACTTAGCATGCCCACCCAATGGATT
GGCATAACTTAGCAGAACTGCACATTAGAGGAAGTTATTTGCCTCACTAA
TCATAGGGTGACTAAGAATTGCAGCTGGCTGACATTGCAGAACTTGACCA
AAACTATTGTTGCACTTCGTACAAGCATAGGAAACCAGAACTTAACTGCG
GTTTCTAATGAATGCGTATCTATTTTTTTCATTATGACGAAGTTTAAAAC
ATGTGAGTTGAGACCTATCTTC
ACATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACCATTTCAGTCCTTCTTAGAAGGG
GGATCAACATACCCATGGNGAGGAGATACAGAGACAAAGTTTGCAGTAGA
AATGGAAGGAAAGGTCAGCCAGTGACTGTCCCACCTGGGGATCCATCCCA
TATACAGTTAAACCCAGACACTTATTGTGAATGCCAACAAGTGCTTGGTG
ACAGGAGCCTGATTTGCCTGTCTTCTGAGAGGCTCTGCCAGTGCCTGACA
AATACAGAAGTGGATGCTCACAGTCTTCCATTGTACTGAGCACAGGGTCC
CTAATGGAGGATTNATAGATTCCCNNACGGAGCTGAAGGGGTTTGCAACC
CCTTAGGAAGAACAACAACACCAACCAAAAAAAACCCCCAGAGCTCCCAG
GGACTAAACCACCAACCAAAGAGTACACATGGAGGGACACAAGACTCCAG
CTGCATATGTAACAGAGGATGGCCTTGTGGGACATTAATGAAAGGAGAAG
CCCTTGGTCTTGTGAAGACTTGATGCCCCAGTGTAGGGGAACGCCAGGAC
AGGGAACCGGGAGTAGGGAGTAGGTAGATTAACGAGCAGGTCGCAGGCAG
TTTTCTCCCTTTTTCTTCTATCCTATTTTCACACATCTCTACTTTCCCTT
CTTCTTTTCTTTATCCCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_j11.b1 MSMg01no156_j11.b1 CHROMAT_FILE:
MSMg01no156_j11.b1 PHD_FILE: MSMg01no156_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:46 2005
         (319 letters)



>mm_chr5_86033389_86034107
          Length = 719

 Score =  605 bits (313), Expect = e-178
 Identities = 313/313 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtcagcaaagtagtttattttcagagctcgaggctgcgttcatttcttttata 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtcagcaaagtagtttattttcagagctcgaggctgcgttcatttcttttata 264

                                                                       
Query: 65  gaatgcttgtgtgtgaataatggttgtctaattgtcagatggagagcacgtcatcctatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaatgcttgtgtgtgaataatggttgtctaattgtcagatggagagcacgtcatcctatt 324

                                                                       
Query: 125 tccagatggatgattccagtcacctgaaggatcacccatccactggttaatttgggctct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tccagatggatgattccagtcacctgaaggatcacccatccactggttaatttgggctct 384

                                                                       
Query: 185 tggttcctttagtatttctagcaagcagtacaggcaatgtattgttcatagtcatttatc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tggttcctttagtatttctagcaagcagtacaggcaatgtattgttcatagtcatttatc 444

                                                                       
Query: 245 tttaaagtgatattagatgacaccttctgctgatattcctcaacttatgatggggttaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttaaagtgatattagatgacaccttctgctgatattcctcaacttatgatggggttaca 504

                        
Query: 305 tcccaataaagtc 317
           |||||||||||||
Sbjct: 505 tcccaataaagtc 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)