BAC Information

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BAC

Clone NameMSMg01-156P06
Chromosome5 (Build37)
Map Location 54,210,471 - 54,210,783
singlet/doubletsinglet
Overlap geneTbc1d19
Upstream geneZcchc4, Anapc4, Slc34a2, 2310045A20Rik, 1810013D10Rik, LOC100041198, LOC100041911, Rbpj, Cckar
Downstream geneStim2, EG666377, LOC666380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156P06.T7 (MSMg01no156_p06.b1)MSMg01-156P06.TJ (MSMg01no156_p06.g1)
ACCAG357561AG357562
length718716
length of high quality
(start - end)
316 (45 - 360)---
definitionCHROMAT_FILE: MSMg01no156_p06.b1 PHD_FILE: MSMg01no156_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:12 2005CHROMAT_FILE: MSMg01no156_p06.g1 PHD_FILE: MSMg01no156_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTACATTCCGTCATTCACTTCTTTACTATATTACTTCATAAAATTAA
AGATGCAATAAAAACCAACATATAAAAGATAAAGATGACATTGCATCCTG
ACTCAAGACAAATAAGAGACCCTGAGTTTCAAGTTTATATATCAACTGCA
ACAATACAATCTAGATCTTCCCCGAGTATACACCAAATGTTGCCTGAAAA
TATACCCAAAAAGACAGGCTATGCATACTGCTCTTCCAGAGGATCCATGT
TCAATTCTCAGCACCTACATCAGGTAGGTTATGGTCACCTGTAACTCCAG
CTGCAGAGATATCTGACACCCCTACCCTCTGTAAGCAGCTGTACTCACAA
ACACTTACCCACACGCACCCCCACACACACACATGTAATTTTAAAATGAT
AAAAAAAACTTTTTTAAAAGACAGAACACATTTTGCTCATGGCATAGACC
TTTCATATGAATATAAATTCCATATACTTGAGATAACATTTCATGAAGTT
TTGTTTTTTAACTAATACCCAGATATTCCGGCGTTCTAGACACTACAATA
CCCATTATATATTCCTCTCTCCAAAGTTCATCTTCTTTCATGGCCCTGCC
TGTATTAATTCTATTATTTACAACTCTTAAAATTGAATAACCCTATATAT
TTAATGCTTAATGCAGTG
CCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTGAAACGATGCTTGGGTGCTACT
CACGTTGACAGACCCAGACTTATACACAGGCCGGAAGGGTGACATCTTCT
TGGGAGCCAACTCCTAGCAAAAAGCGGTTATCATCTCTGCAGCCGTCTCG
GGCTATTTACTTACAGGTGGGACTTTCCCACCCTGATGAGAGATTCGTTT
TCCTAGCATGATGTTTTTGCAAGAAGCCCACCACAGCTAAACACACTCTG
ATAACATCTTGTTTTTCTCCTATACTTCCTGGACCTGTGGTTAAGTGTCT
CCAGCTGCACTCTTTCTTTTTGCCCTCCACCCCTCATAGTTGCCTTTCAT
TATACGAGACTTGATACTCCCCCCAATAGCCGGTCTTGTTTCCATTCTTC
GAGTCTCTTGCCCCTCAGTCCCCACTCTCTCTCTTGCAAACCCTGTTGAC
TGACCTGCCCAAAACGCTAAATGTCATACTGCCTGACCCAAGAACAGCCT
TCCCTTCTCTAGGTATATCTTTAGAGCTCTGTCCCAGAGCTGGCCTCCCT
GGCTATTCATGTTTCCCAAGCGCTTCACCGCTTGCTGTTTCTTGAAAGGT
ACTCTTGCCCCTTATTGAACTCTTTGGAATATGCACAGTCTGATCCCCAC
CCCATAGGGGCTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_p06.b1 MSMg01no156_p06.b1 CHROMAT_FILE:
MSMg01no156_p06.b1 PHD_FILE: MSMg01no156_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:12 2005
         (316 letters)



>mm_chr5_54210353_54211068
          Length = 716

 Score =  598 bits (309), Expect = e-175
 Identities = 312/313 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctacattccgtcattcacttctttactatattacttcataaaattaaagatgca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ggaattctacattccgtcattcacttctttactatattacttcataaaattaaagatgca 372

                                                                       
Query: 64  ataaaaaccaacatataaaagataaagatgacattgcatcctgactcaagacaaataaga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ataaaaaccaacatataaaagataaagatgacattgcatcctgactcaagacaaataaga 312

                                                                       
Query: 124 gaccctgagtttcaagtttatatatcaactgcaacaatacaatctagatcttccccgagt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gaccctgagtttcaagtttatatatcaactgcaacaatacaatctagatcttccccgagt 252

                                                                       
Query: 184 atacaccaaatgttgcctgaaaatatacccaaaaagacaggctatgcatactgctcttcc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 atacaccaaatgttgcctgaaaatatacccaaaaagacaggctatgcatactgctcttcc 192

                                                                       
Query: 244 agaggatccatgttcaattctcagcacctacatcaggtaggttatggtcacctgtaactc 303
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 agaggatccatgttcagttctcagcacctacatcaggtaggttatggtcacctgtaactc 132

                        
Query: 304 cagctgcagagat 316
           |||||||||||||
Sbjct: 131 cagctgcagagat 119


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)