BAC Information

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BAC

Clone NameMSMg01-156P12
Chromosome5 (Build37)
Map Location 7,330,793 - 7,331,022
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041208, EG435830, LOC100042651, 4921511H03Rik
Downstream geneLOC242823, LOC667767, EG546855, Steap4, Sri, LOC433840, Adam22
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156P12.T7 (MSMg01no156_p12.b1)MSMg01-156P12.TJ (MSMg01no156_p12.g1)
ACCAG357573AG357574
length733790
length of high quality
(start - end)
314 (46 - 359)232 (77 - 308)
definitionCHROMAT_FILE: MSMg01no156_p12.b1 PHD_FILE: MSMg01no156_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:13 2005CHROMAT_FILE: MSMg01no156_p12.g1 PHD_FILE: MSMg01no156_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCCGAGAAATACCGAAAGGCTGAGAAACACCTGAAAAAATGT
TCAACATCCTTAATCATCAGAGAAATGCAAATCAAAACAACCCTGAGATT
CCATCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCTGGTGACAGCA
GATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAG
AATATTGGACATAGTACTACCGGAGGATCCCACAATACCTCTCCTGGGCA
TATATCCAGAATATGTCCCACCCGCCCCCAAGGACACATGCTCCACTATG
TTCATAGCAGCCTTATCCACAACAACCAGAAGCTGGAAAGAACCCAGATG
TCCCTCAACAGAAGAATGGATACAAAAAATGTGGTACATTTACACAATGG
AGTACTACTCAGCTATTAAAAAGAATGAATTCACAAAATTCCTAGGCAAA
TGGTTGGACCTGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACAAAA
GAACTCAAATGAAATGTACTGACTGATAAGTGTATATTAACTTAGAAACT
TAGTATAGCGAGATATAAGGTACAATATGTAAAACATATGAAACTGAAGA
AGAACGAAGACCAAAGTGTGTACACTTTGCTCN
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTGAGCGGATATGGCTCCACTTC
AAAGCTGGTAGAATTTAGATCTTAAGCTGTCACGGACTGTTTGAGGATCC
TTAATACATGTCAAGCACAAAATCTGTCTTAAAGGAGATGGTGGACTAGG
AGTGGAACTTACTGAAAAATGCATTTCACACTGCTCTGTAAATCTACTAG
CCTCTGTGAAGAAACAGGAACTGATGTGAGAGGGGGAGAGGGGGAGAAAG
AGGGAGAGCTCCTTTTCTTTTTTTTTTCCTTTCCTTCCCCTTTTTCCTTC
CTCCTTCTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCGGGGGGNNGGGT
GNGGGGGGGTTTGTTTTTCCCCCCCCCCTTTAAAACAAAAACACCCTCCC
GGTTGGGCGGTTTCTCCTCCCTCCTCTACCTCTTTTCATTCCTCTCCCTC
CCTCCCCATATTTCCGCTTTCCCGCTTTTCTCTTCTTTTCCCCTTTACCC
CCCTTTCTCTTCTTTTCTATTCCCCCTTTTCTCTCTTTTTTTCCTTCGCT
ACCCTCCCCCCTTCCTTCCCTATTCCTCGTTCTCTTATCTCTCTTCTCTC
CTTCCCCCTTTCCCTCCCCCCCCCCACTTTTTCCCTTTCTTCCTTATTAT
CCCCCTCCCCCCTCCCCTTTTCCATCCTTTTATCCCTTTTTCTCCGCCCC
TCCTTTTTCTCCCCCTCTTTTTTTTCCCCCCTCTTTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_p12.g1 MSMg01no156_p12.g1 CHROMAT_FILE:
MSMg01no156_p12.g1 PHD_FILE: MSMg01no156_p12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:13 2005
         (232 letters)



>mm_chr5_7330622_7331253
          Length = 632

 Score =  422 bits (218), Expect = e-122
 Identities = 228/232 (98%), Gaps = 2/232 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctgagcggatatggctccacttcaaagctggtagaatttagatcttaagctgtcacgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 cctgagcggatatggctccacttcaaagctggtagaatttagatcttaagctgtcacgga 342

                                                                       
Query: 61  ctgtttgaggatccttaatacatgtcaagcacaaaatctgtcttaaaggagatggtggac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ctgtttgaggatccttaatacatgtcaagcacaaaatctgtcttaaaggagatggtggac 282

                                                                       
Query: 121 taggagtggaacttactgaaaaatgcatttcacactgctctgtaaatctactagcctctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 taggagtggaacttactgaaaaatgcatttcacactgctctgtaaatctactagcctctg 222

                                                               
Query: 181 tgaagaaacaggaactgatgtgagagggggagagggggagaaagagggagag 232
           ||||||||||||||||||||||||||||| |||||||||||  | |||||||
Sbjct: 221 tgaagaaacaggaactgatgtgagaggggcagagggggaga--gggggagag 172


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)