Query= MSMg01no157_a01.b1 MSMg01no157_a01.b1 CHROMAT_FILE:
MSMg01no157_a01.b1 PHD_FILE: MSMg01no157_a01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:16 2005
(646 letters)
>mm_chr5_84777657_84778703
Length = 1047
Score = 978 bits (506), Expect = 0.0
Identities = 521/526 (99%), Gaps = 1/526 (0%)
Strand = Plus / Minus
Query: 122 attatagttttgatctagtcagggtagaacctagatatatggccaaggtatttgtgaaac 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1047 attatagttttgatctagtcagggtagaacctagatatatggccaaggtatttgtgaaac 988
Query: 182 tattttgagtctgagtattatttctgggaggatagggctaggaggaaaaaccaagaacta 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 987 tattttgagtctgagtattatttctgggaggatagggctaggaggaaaaaccaagaacta 928
Query: 242 atttcaacacactgaaatcttttcttgtgcttatttgctacctgtatattctttgtagca 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927 atttcaacacactgaaatcttttcttgtgcttatttgctacctgtatattctttgtagca 868
Query: 302 atatctctgtccttctctttattttgtgacatatttattaatttccattatgagttttat 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 atatctctgtccttctctttattttgtgacatatttattaatttccattatgagttttat 808
Query: 362 aaaaattttgcaaagtgtggtgttcatggctgatgcatttcaatattcagcccttcagat 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 aaaaattttgcaaagtgtggtgttcatggctgatgcatttcaatattcagcccttcagat 748
Query: 422 atatcactctactgtttta-ggaatcccatagccactgctgaggaaccatgttttcctga 480
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 747 atatcactctactgttttagggaatcccatagccactgctgaggaaccatgttttcctgt 688
Query: 481 atttgatgaactattttattttggctactttcacatgagtgttgatgtgttgtcttttag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 atttgatgaactattttattttggctactttcacatgagtgttgatgtgttgtcttttag 628
Query: 541 caatatgtataggcaatgatctttttgtatatactaattgggtttaatgggcattttgga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 caatatgtataggcaatgatctttttgtatatactaattgggtttaatgggcattttgga 568
Query: 601 ctcactgattactgtgtttcatgaaatttggggaatttatttgtat 646
||||||||| | |||||||||| |||||||||||||||||||||||
Sbjct: 567 ctcactgatcaatgtgtttcatcaaatttggggaatttatttgtat 522
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1047
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1037
Effective search space: 659532
Effective search space used: 659532
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no157_a01.g1 MSMg01no157_a01.g1 CHROMAT_FILE:
MSMg01no157_a01.g1 PHD_FILE: MSMg01no157_a01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:16 2005
(621 letters)
>mm_chr5_84726847_84727866
Length = 1020
Score = 1058 bits (547), Expect = 0.0
Identities = 601/621 (96%), Gaps = 8/621 (1%)
Strand = Plus / Plus
Query: 1 actccaagagactttttcaaaattcttctctcagtaaccaactttctttctgggtgaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actccaagagactttttcaaaattcttctctcagtaaccaactttctttctgggtgaatt 260
Query: 61 gtgacccgtttgctaaatggatcaaagttaattgaactttagtgcactaaatcctatcat 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgacccatttgctaaatggatcaaagttaattgaactttagtgcactaaatcctatcat 320
Query: 121 tatgcaatcttgtaagaagagcgttttaacttcagtacctaatatattcagaccaacttc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 tatgcaatcttgtaagaagagcgttttaacttcagtacctaatatattcagaccaatttc 380
Query: 181 acagaaacagcacttttaaagccgttataaagtatgtaatttttaaacttctgattctat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagaaacagcacttttaaagccgttataaagtatgtaatttttaaacttctgattctat 440
Query: 241 acaagaaagacactaagaagcttataattataaagaaaagacatatcagtgtcttcccag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaagaaagacactaagaagcttataattataaagaaaagacatatcagtgtcttcccag 500
Query: 301 caataagtgattctaaatataataagtgatttctaatattgccttaagtaatttttactt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 501 caataagtgattctaaatataataagtgatttctaatattgccttaagtaattttcactt 560
Query: 361 tgtatggtttcaatttactttattagatcttagagcttttttggacatgtctgtttccaa 420
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 561 tgtatggtttcaatttactttattagatcttagtgcttttttggacatgtctgtttccaa 620
Query: 421 aaatgtaagattatcgtgatttcataagtaatgtttctaataatactatgctttgattca 480
||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||
Sbjct: 621 aaatgtaagattatcgtgatttcataactaatgcttctaataa-actatgctttgattca 679
Query: 481 atttataaaatatatatatatatatatatatatatatatatatatatgcagagtgaaata 540
|||| | | ||||||||||| |||| ||||||||||||||||| ||||||||||||
Sbjct: 680 attt-tc---tgtatatatatatgtatacatatatatatatatata--cagagtgaaata 733
Query: 541 cgatccatcaaagaccacagtaacctggaaagtgaagcaagtgctaagagtttgctgact 600
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 cgatccgtcaaagaccacagtaacctggaaagtgaagcaagtgctaagagtttgctgact 793
Query: 601 cccataaaaaatgcatagtat 621
|||||| ||| ||||||||||
Sbjct: 794 cccatagaaa-tgcatagtat 813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1020
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1010
Effective search space: 617110
Effective search space used: 617110
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
