Query= MSMg01no157_d01.b1 MSMg01no157_d01.b1 CHROMAT_FILE:
MSMg01no157_d01.b1 PHD_FILE: MSMg01no157_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:29 2005
(693 letters)
>mm_chr5_44748437_44749528
Length = 1092
Score = 1203 bits (622), Expect = 0.0
Identities = 673/692 (97%), Gaps = 6/692 (0%)
Strand = Plus / Plus
Query: 5 gaattcattatactctcctcaggtgagctgtattattgggaggcctacaaaataagtctg 64
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 205 gaattcattatactctcctcaggtgagctgcattattgggaggcctacaaaataagtctg 264
Query: 65 actgtgcttcatgatacc--ggttgctgacttgtgtctccctgtatcatcaacataaatc 122
|| ||||||||||| | |||||||||||||||||||||| |||||||||||||||||
Sbjct: 265 acagtgcttcatga---cagggttgctgacttgtgtctccctatatcatcaacataaatc 321
Query: 123 ctagaacattaggaaatcccagataaaaagttacataaatgaaatgtgttgctaaacaag 182
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 322 ctagaacataaggaaatcccagataaaaagtttcataaatgaaatgtgttgctaaacaag 381
Query: 183 tatttgatggtgggttaaccaatgtaacaaacatttttgatacattttattcaaatgatg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tatttgatggtgggttaaccaatgtaacaaacatttttgatacattttattcaaatgatg 441
Query: 243 actgtgttatatatttttctagaaagaccagtacaacaaaagcatcaaaaattccctctt 302
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 442 actgtgttacatatttttctagaaagatcagtacaacaaaagcatcaaaaattccctctt 501
Query: 303 tttatataaaaagtcactaaagcaaagcttcaaatacgtatgtttatttgagtgctttat 362
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 502 tttatataaaaagtcactaaagcaaagcttcaaataggtatgtttgtttgagtgctttat 561
Query: 363 ggcagaaatgctcatgggcgttgaaataaaggaagcagggcaggagtagggaaatgctat 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ggcagaaatgctcatgggcgttgaaataaaggaagcagggcaggagtagggaaatgctat 621
Query: 423 gcaagaaaatggcttcacaggagtctagcttcatcctacagggagttctgaatcacaaag 482
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 622 gcaagaaaatggcttcacaggagtctagcttcatcctacagggagttctgaaacacaaag 681
Query: 483 aacagacttagttcttccttcacttagttccaagcaatggcagacttttgaattacgtcc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 aacagacttagttcttccttcacttagttccaagcaatggcagacttttgaattacgtcc 741
Query: 543 atcagccactggctgaggatagagttccatgggactgtaactgtactcattcatttatag 602
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 742 atcagccactggctgaggatagagttccatgggactgtaactgtactcattgttttatag 801
Query: 603 gatatggaatttacaatggacactaagaaagtaagaatccatgttaagctcatttgtttc 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 gatatggaatttacaatggacactaagaaagtaagaatccatgttaagctcatttgtttc 861
Query: 663 ttttttttttt-caagtttgcaacctacctct 693
||||||||||| ||| ||||||||||||||||
Sbjct: 862 ttttttttttttcaactttgcaacctacctct 893
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1092
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1082
Effective search space: 739006
Effective search space used: 739006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no157_d01.g1 MSMg01no157_d01.g1 CHROMAT_FILE:
MSMg01no157_d01.g1 PHD_FILE: MSMg01no157_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:29 2005
(525 letters)
>mm_chr5_44893991_44894915
Length = 925
Score = 801 bits (414), Expect = 0.0
Identities = 492/520 (94%), Gaps = 6/520 (1%)
Strand = Plus / Minus
Query: 1 tttcctccctctagcccactcaaagcctttttcctttattcacttaaatcactctagaag 60
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 603 tttcctccctctagcctactcagagcctttttcctttattcacttaaatcactctagaaa 544
Query: 61 ggtctgttcctggcctgttctcctctgtagccattttgtacttcataaatttgttggttt 120
| |||||||||||||||||||||| ||||| |||||||||||||||| ||| ||| |||
Sbjct: 543 gatctgttcctggcctgttctcctttgtaggcattttgtacttcatagctttattgcttt 484
Query: 121 gtctttctgaagtatgtcaacatctaaaatgccctgtagga-tagagccttggtttgttt 179
|||||||||||||||||||||||| || |||||||||| || |||||| || ||||||||
Sbjct: 483 gtctttctgaagtatgtcaacatccaagatgccctgta-gagtagagcatttgtttgttt 425
Query: 180 ggcctgtcactgccttctgacaactcctccatatccacttggcatgtgataggtattggg 239
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ggcctgtcactgtcttctgacaactcctccatatccacttggcatgtgataggtattggg 365
Query: 240 tgttgtttgcttaatgagtgaagaattaagctaccaacaatctccctctgtcccctaacc 299
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 364 tgttgtttgcttaatgagtgaagaattaagctaccaacaatctctctctgtcccctaacc 305
Query: 300 cagccatggttaaaagctgttcatggatttgctaccataaactggtcagctcgagaacag 359
||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 cagtcatggctaagagctgttcatggatttgctaccataaactggtcagctcgagaacag 245
Query: 360 aaagattaacaccattcctatcagaaaaatccaagaacaaaaacagctggccagtggttg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 aaagattaacaccattcctatcagaaaaatccaagaacaaaaacagctggccagtggttg 185
Query: 420 gagcacacctttaatcctagcaaaaccaggtagatctcttgagtttgagtttggccagcc 479
|||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 184 gagcacacttttaatcctagcaaaaccatgtagatctcttgagtttgag----gccagcc 129
Query: 480 ttgtctacagaatgagtttcagcacagccaagagtttctc 519
| ||||||||||||||||||||||||||||||||||||||
Sbjct: 128 tggtctacagaatgagtttcagcacagccaagagtttctc 89
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space: 471225
Effective search space used: 471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
