Query= MSMg01no157_n22.b1 MSMg01no157_n22.b1 CHROMAT_FILE:
MSMg01no157_n22.b1 PHD_FILE: MSMg01no157_n22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:18 2005
(318 letters)
>mm_chr5_120830164_120830881
Length = 718
Score = 572 bits (296), Expect = e-168
Identities = 308/312 (98%)
Strand = Plus / Minus
Query: 5 gaattctcctgcacctgcctcctgcctctcacaggagggctggggttacagacacccaca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gaattctcctgcacctgcctcctgcctctcacaggagggctggggttacagacacccaca 457
Query: 65 ctccatatccagcttttgcatggtctctgggggtccttatgcttgtgaggtaagtgcatt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ctccatatccagcttttgcatggtctctgggggtccttatgcttgtgaggtaagtgcatt 397
Query: 125 tacaggctgtgtccccagtgggggtgtgcctagtcctatgggttgaactgcacccctcct 184
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 396 tacaggctgtgtccccagtgggggtgtgcctagttctatgggttgaactgcacccctcct 337
Query: 185 agacattccatgtcatctgtgataggactgtttatacctatgaagtctgcaatagcgcct 244
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 336 agacattccatgtcatctgtgataggactatttatacctatgaagtctgcaatagcgcct 277
Query: 245 tcccccatgtttcagagggcagagctgagaccagggaggggctctgtcatttgcttgtgg 304
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 276 tcccctatgtttcagagggcagagctgagaccagggaggggctctgtcatctgcttgtgg 217
Query: 305 ctggggtggccg 316
||||||||||||
Sbjct: 216 ctggggtggccg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space: 219081
Effective search space used: 219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no157_n22.g1 MSMg01no157_n22.g1 CHROMAT_FILE:
MSMg01no157_n22.g1 PHD_FILE: MSMg01no157_n22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:18 2005
(302 letters)
>mm_chr5_120671565_120672266
Length = 702
Score = 507 bits (262), Expect = e-148
Identities = 285/302 (94%), Gaps = 15/302 (4%)
Strand = Plus / Plus
Query: 1 aggacagcaggagtggggcggaagtcaaagcctccagggggcatattctccagagacaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 aggacagcaggagtggggcggaagtcaaagcctccagggggcatattctccagagacaaa 275
Query: 61 aaaaaaaaaaaaaaaaaaaaaaaggaaaaaaagctctgttcggtccaccccaggacagca 120
|||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 276 aaaaaaaa---------------ggaaaaaaagctctgttcagtccaccccaggacagca 320
Query: 121 ggccactaaaaagcctctgtggactccgcggtggctgctgcccactggggccccgcattc 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggccactaagaagcctctgtggactccgcggtggctgctgcccactggggccccgcattc 380
Query: 181 cagagcacaggttccagctggccacatcctgtccctttgcaagactcactgtcctcacct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagagcacaggttccagctggccacatcctgtccctttgcaagactcactgtcctcacct 440
Query: 241 gccacacatccccctcgcccccgccctcccccccccccaggacagaagaaagaaatgaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gccacacatccccctcgcccccgccctcccccccccccaggacagaagaaagaaatgaac 500
Query: 301 ca 302
||
Sbjct: 501 ca 502
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 702
Length adjustment: 9
Effective length of query: 293
Effective length of database: 693
Effective search space: 203049
Effective search space used: 203049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
