BAC Information

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BAC

Clone NameMSMg01-157O22
Chromosome5 (Build37)5 (Build37)
Map Location 105,154,579 - 105,154,829105,232,322 - 105,232,664
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAff1, Klhl8, Hsd17b13, EG666629, Hsd17b11, Nudt9, Sparcl1, LOC100041136, Dspp, Dmp1, LOC100041145, Ibsp, Mepe, Spp1, Pkd2, BC005561, LOC100042165, LOC100041172, D930016D06Rik, 2310012P17Rik, LOC640963
Downstream geneLOC100041199, LOC666726, C230055K05Rik, LOC100041216, Abcg3, LOC626471, EG545790, 5830443L24Rik, BC057170, Gbp4, LOC675363, LOC626578, Mpa2l, EG634650, Lrrc8b, Lrrc8c, Lrrc8d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157O22.T7 (MSMg01no157_o22.b1)MSMg01-157O22.TJ (MSMg01no157_o22.g1)
ACCAG358281AG358282
length819749
length of high quality
(start - end)
266 (32 - 297)353 (366 - 718)
definitionCHROMAT_FILE: MSMg01no157_o22.b1 PHD_FILE: MSMg01no157_o22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:22 2005CHROMAT_FILE: MSMg01no157_o22.g1 PHD_FILE: MSMg01no157_o22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:22 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(105,154,579 - 105,154,829)(105,232,322 - 105,232,664)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGGACAGC
CAGGGCTATAAAGAGAAACAAAGTCTCAAAAAACAACAACAACAAAAGAA
AAAATGAAAAGTAAAAAGAAAGGAAAATACAAAGGAGAGAAATAATGAAG
AAAGAAAATCAAAATGATGAAGAGTAGGAGAGCATGATTTTTGACAGATA
CATTTCTCATGCTCTTTCTGAAGAGGATGACCATCACAGAAGAGTTCATG
CCAAGCCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAAAAA
ATANANAAAATTTTTTTTTTTTTTTAATTATAAAAAANNTAAAAAAAAAT
TTTTTTATACTCCCAAACANAACCCCTNATTTTTTTATTTTTTTTTTTTN
NNTTTTTNTCCCNCCATAAAAAAAAAAAAAAAATTTTCGGGGGGGGGGGG
TGCTTCCCCTTCTCTTTACCGGTGCGCTTTTCTTTTTTCGCTCCCCCCCC
CCGCCCTCTTTCTTTCCCTATACCACCCCTCCCTTTATCGTTCTATTACT
CCCGTCATACTTATATCGCCTCCTACGCCATCTTTTTTATATACCCTTCT
CTTTTTTCGACCCCCTGCCCCTATCTTTTTCTCTGTACCACATCGTATCG
TTAACATACCCCCTCCTCACTCCGTTATTTCATTTACTACTCCTCTCCCC
TTTTCTTTGTTGTCTTCCTCACACCACCATTTATCTACACTCCCTCCTCT
ACTCCCCTTATTTTTTTACCGCTTTGCTCATTATCACCCTTTCATATCCC
CCCTTTCTCCTTCCCCTAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCATGCTTCCATTCTTGTTCATGACTGTCTACTGAGTCA
GCAAGATGCTGCCACATTTTATCTCCTTGGAATGCCTGTGTTATTAGGAA
GCTTGGGTTCTCTGCTTCAGGAGTTACAATATTTGATCAATACCTTTGCC
CTTTATAGAGAGCAGCATTGTAGATTTAGAAATAAACGACATTGTTGAAT
CTACAGAGCTGGCATATAGTGTGGCTCTGAGAATTTCCCAAGTGTATTAG
GACTACTTCCAGTATGCTTTTGAGTAGATGCTGCAGCTATACCAATTTCG
ATTANNTTTGTTCCCCCCCCCCCCCACAGACTCAATTGGATAGATTGACA
TAATGGATAACAAAATTGCAAGACTATCATGACTACTGTCAATTAATTAA
AAACAAATGTTTAATGGTGTGTTTTAACTATGGTTTTATAACTGGTAGCA
ACAGTGGATCTACTGAATAAACATTGACATTACCTTTGTGTTCTCTTACA
GATGTGCTGGTGAAGAATTCTTGGAGATCCAGGGCTTCTGTGTCTCATCG
TAGGGCTTCTGGGAGAATCACCTGGCTTTATCTTGAATACTGATTATCCT
CTTAAAAATTACTGATGTACAATTGCTACCTCTTAAGAAAAGGATTCAGT
GTTAAATTACCATTTCTGTGTTTCCATATTTAAATTCTCTTAAATTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_o22.b1 MSMg01no157_o22.b1 CHROMAT_FILE:
MSMg01no157_o22.b1 PHD_FILE: MSMg01no157_o22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:22 2005
         (266 letters)



>mm_chr5_105154282_105154947
          Length = 666

 Score =  470 bits (243), Expect = e-137
 Identities = 249/251 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaggacagccagggctataaagagaaacaaagtctcaaaaaacaacaacaacaa 64
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 548 gaattccaggacagccagggctatacagagaaacaaagtctcaaaaaacaacaacaacaa 489

                                                                       
Query: 65  aagaaaaaatgaaaagtaaaaagaaaggaaaatacaaaggagagaaataatgaagaaaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aagaaaaaatgaaaagtaaaaagaaaggaaaatacaaaggagagaaataatgaagaaaga 429

                                                                       
Query: 125 aaatcaaaatgatgaagagtaggagagcatgatttttgacagatacatttctcatgctct 184
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 aaatcaaaatgatgaagactaggagagcatgatttttgacagatacatttctcatgctct 369

                                                                       
Query: 185 ttctgaagaggatgaccatcacagaagagttcatgccaagcctgtgtgtgtgtgtgtgtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ttctgaagaggatgaccatcacagaagagttcatgccaagcctgtgtgtgtgtgtgtgtg 309

                      
Query: 245 tgtgtgtgtgt 255
           |||||||||||
Sbjct: 308 tgtgtgtgtgt 298


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 666
Length adjustment: 9
Effective length of query: 257
Effective length of database: 657
Effective search space:   168849
Effective search space used:   168849
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no157_o22.g1 MSMg01no157_o22.g1 CHROMAT_FILE:
MSMg01no157_o22.g1 PHD_FILE: MSMg01no157_o22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:22 2005
         (353 letters)



>mm_chr5_105232112_105232864
          Length = 753

 Score =  617 bits (319), Expect = 0.0
 Identities = 337/343 (98%)
 Strand = Plus / Minus

                                                                       
Query: 11  acagactcaattggatagattgacataatggataacaaaattgcaagactatcatgacta 70
           |||||||||||| ||||||||| ||||||| |||||||||||||||| ||||||||||||
Sbjct: 553 acagactcaatttgatagattggcataatgtataacaaaattgcaaggctatcatgacta 494

                                                                       
Query: 71  ctgtcaattaattaaaaacaaatgtttaatggtgtgttttaactatggttttataactgg 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ctgtcaattaattaaaaacaaatgtttaatggtgtgttttaactatggttttataactgg 434

                                                                       
Query: 131 tagcaacagtggatctactgaataaacattgacattacctttgtgttctcttacagatgt 190
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 433 tagcaacagtggatctactgaataaacattgacattacctttgtgttgtcttacagatgt 374

                                                                       
Query: 191 gctggtgaagaattcttggagatccagggcttctgtgtctcatcgtagggcttctgggag 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gctggtgaagaattcttggagatccagggcttctgtgtctcatcgtagggcttctgggag 314

                                                                       
Query: 251 aatcacctggctttatcttgaatactgattatcctcttaaaaattactgatgtacaattg 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 aatcacctggctttatcttgaatactgattatcctcttaaaaattactgatgtacaattg 254

                                                      
Query: 311 ctacctcttaagaaaaggattcagtgttaaattaccatttctg 353
           ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 253 ctacctcttaagaaaaggattcagtgttaaattgccatttctg 211


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 753
Length adjustment: 9
Effective length of query: 344
Effective length of database: 744
Effective search space:   255936
Effective search space used:   255936
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)