BAC Information

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BAC

Clone NameMSMg01-158C17
Chromosome5 (Build37)
Map Location 46,457,331 - 46,457,635
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040737, Qdpr, EG624224, Lap3, LOC100040762, Med28, 9630031F12Rik, 9630001P10Rik, 1600023N17Rik, Lcorl, LOC100041576
Downstream geneEG666103
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158C17.T7 (MSMg01no158_c17.b1)MSMg01-158C17.TJ (MSMg01no158_c17.g1)
ACCAG358457AG358458
length706703
length of high quality
(start - end)
283 (424 - 706)288 (65 - 352)
definitionCHROMAT_FILE: MSMg01no158_c17.b1 PHD_FILE: MSMg01no158_c17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:39 2005CHROMAT_FILE: MSMg01no158_c17.g1 PHD_FILE: MSMg01no158_c17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGAAA
TTCTCTTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGTGCCACCA
CTGCCTGGTTTAACCAGCCCTTTTCAAAAACCTCTGAGTTCATGTTAGTG
AAGTGCCTTGGAAAGGCCCGAAATTTTGGGGGTCTGGGGAAACTGGTTCC
CAGGGAAGTCTACATTTTAAAAGCCAATGTATCTTAAATCATTAATTCAC
CAATGATCAGTGACTTAATCAGTTAGGTCAATGCATGAGTCTCTCTAAAA
AATACAAAACTAAATCTGATTGTAGGGAATAATTGTACCATGAAAAGACA
AGGATTTTCTATGCCTCTCTACCCTGCCTTGTCTGGTGAATCTCTCCCAT
CTGGTGGCCCCCGGGGTTAGTCAGTGGTACTAAACTTATAAACATAAGAA
AAGACTTTGGTAAGTTTTGTGAGCCTTTCTAGAAAATTGTGAAACATAAG
GAAGACATCAGAGGAACCCTGGTATGTCAGACATCAGAGGGGACTGAAGG
ATGTGAACATTTGAAGAACAAGCCATCTTGCTGGATTTCATTTGTGGGAT
CCTGTGCTAAGGTCAGGTTTACAGGATAGAACTGAATTGAACTGTAGAAC
TTCTAATCCATGCCCACAGAGAAATGGAGACTACTTGGGGTGTGTGTGTG
TGTGTN
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTACCCTACCACTGAGTCTTGTATCTGAAATAGATGA
TCAGGTTGTTCTACTCTGTGATCAAGCTTGGGAAGGTGTAGAGACTGCCA
TGAGACTGAAGGGCAGTAGAGCCCTTGGGAGCGTCAAGATAGAAGTGAAA
TGTACAGTAAGCACACCACTGACAGCCTGTAGATGGCTATTTGCCTATAT
CATTACATTGTATATTCACATAGCCTTTGAAGGTGTGTCTTCATGTCACT
AGAAAAATGAGACAGATGGGGCTCCCTCAGAGAAAGGAAGAGAGAGTCTA
CATGTTATGTGATGGCAACCTCGGCAAAGCCTGAATAAATCTGAAGTGAA
GTTCATGACCCCACACATCCCTTCCAGGGAGAGAAGCTGTGGCCCTGTGG
TGTGCTTTAGAGATTGGCCAGTACTGGTTGGATTCTCATTATTTTCTGAG
ATGCTAGTTCAATTCTCAAAGAAAAACATCTAGGAGAGATTCCCACAGTG
GTCTCACATGTTTTAAGACTTGCATGCTTTCTTAGATGATTTGACAGTTT
CACTAGCTTTAGGCTTTCATAATGTCTTTTCAGAATTGATGCAAAGGAAA
ATATAACTTTAAGATGTGCTCAGGAACCCAGTCCTTTGAAACACTGCTTA
ATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_c17.g1 MSMg01no158_c17.g1 CHROMAT_FILE:
MSMg01no158_c17.g1 PHD_FILE: MSMg01no158_c17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:39 2005
         (288 letters)



>mm_chr5_46457148_46457835
          Length = 688

 Score =  474 bits (245), Expect = e-138
 Identities = 282/305 (92%), Gaps = 17/305 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   taccctaccactgagtcttgtatctgaaatagatgatcaggttgttctactctgtgatca 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 taccctaccattgagtcttgtatctgaaatagatgatcaggttgttctactctgtgatca 243

                                                                       
Query: 61  agct-----------------tgggaaggtgtagagactgccatgagactgaagggcagt 103
           ||||                 |||||||||||||||| ||||||||||||| ||||||||
Sbjct: 244 agcttgacatataattaagtgtgggaaggtgtagagagtgccatgagactggagggcagt 303

                                                                       
Query: 104 agagcccttgggagcgtcaagatagaagtgaaatgtacagtaagcacaccactgacagcc 163
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 agagcccttgggagcatcaagatagaagtgaaatgtacagtaagcacaccactgacagcc 363

                                                                       
Query: 164 tgtagatggctatttgcctatatcattacattgtatattcacatagcctttgaaggtgtg 223
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 364 tgtagatggctatttgcctatatcattacattttatattcacatagcctttgaaggtgtg 423

                                                                       
Query: 224 tcttcatgtcactagaaaaatgagacagatggggctccctcagagaaaggaagagagagt 283
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 424 tcttcatgtcactagaaaaatgagacagttggggctccctcagagaaaggaagagagagt 483

                
Query: 284 ctaca 288
           |||||
Sbjct: 484 ctaca 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)