BAC Information

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BAC

Clone NameMSMg01-158F04
Chromosome5 (Build37)
Map Location 47,372,218 - 47,372,517
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666103
Downstream geneLOC100040865, LOC100040876
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158F04.T7 (MSMg01no158_f04.b1)MSMg01-158F04.TJ (MSMg01no158_f04.g1)
ACCAG358565AG358566
length715708
length of high quality
(start - end)
356 (53 - 408)285 (90 - 374)
definitionCHROMAT_FILE: MSMg01no158_f04.b1 PHD_FILE: MSMg01no158_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:50 2005CHROMAT_FILE: MSMg01no158_f04.g1 PHD_FILE: MSMg01no158_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTTCTGTTTGGATTTTCTTTATTCTATTTTAACTTCCA
GGTCTTGAACTGTTTTATGATTTTCTTTGACTGTCTTTTAGTGTTTTCAT
TGATTTCTTTAAGGTATTTACTCATTTTTAACAACACTCATCATTTTCAT
AAAGACTTTTAAATTTGTTGGCTCCTAAGCTATGTAGAAATTTTCAGGGC
CTACTATTAGAGGGTTGCTGGGCTCTCATGGAGACACATTGTCATGACTG
TTATTGATAAAGTTTTTAAGCTGTAGTCTTAGCATCTGGTTTTGGGAAGA
TTGTAATTCTAGGTGGTGATATCTGCCCTTTTTTTTTTTTTTTTTTTTGG
TTGGTTGGNTGNNNNNCCCCCCCCCAAAAAAAAAAAAATTATNCGCCCCT
CTCCTCCATCTTTAACTTTAAACAAATCTTAAACCCTAACACTACATCAA
ACTATCATCCCACACACATATATTTCAAATAAATTTCTCTAACTCTCCTC
TCCTCAACTACCAACAATAAACCACCCAATCCACTCTCCTACCCTACCTT
TTTTACTTCTCCTCCTTAATATACTCCACTCCCTCTCCACCCTTTTTTTC
TTAAATCTAATTACGATCCCCCCCCCTCTACCCCTTATCTACACCAATAA
ATCCTCCACTCCTCG
NNCCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAGAGTCCTGTACTAA
GCAGTAACTGCCCAATGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCAC
GTGCGCGCGTGCGTGTGCGTACGTGCGTGTGCGCGTGCGTGTGCGTACTT
GCATGTGCACATGCGTGTACCCAGTAAAGAGACTCTGGACCTTCCTTCCT
GGCTCTTTGCTTATGGTCTTCTTTACTTCAGTTTTGAAATATAAACAAAC
TGAACAGTTACAAAAACTAAGGGAAACAAGGATTATTTATTTATTTTGAA
ATATTTATTAAATATTTTTTTTATCCCCCCCCCCCCTGTTATCCCCTTTC
CTAGTTTCACCTCCGAAAATCCCCAAACCAATCACCCCTCCCCCCTGCTC
TCCAGCCCACCCACTCCCATTCCTGGCCCAGGCATTCCCCTATACTGGGG
CACAGAACCTTCACAGGACCAGGGATCTCTCCTCCCATTGATGACCCACT
AGGCCATCCTCTACTTCATATACAGTTAGAGCTACAAGTTCTATTATGCG
TTTCCTTTGATTGCCGCTTTATTTCCAAGGCCTCTCTAATTTTCTGTTTA
CTTAACACCCATTTTTTTCCTTAACACCTCTTTAACCCTTTTTTTTTTCT
CCTCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_f04.g1 MSMg01no158_f04.g1 CHROMAT_FILE:
MSMg01no158_f04.g1 PHD_FILE: MSMg01no158_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:50 2005
         (285 letters)



>mm_chr5_47371957_47372641
          Length = 685

 Score =  468 bits (242), Expect = e-136
 Identities = 279/300 (93%), Gaps = 15/300 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctgtactaagcagtaactgcccaatgg------------gtgtgtgtgtgtgtgtgtg 48
           ||||||||| ||| |||||||||||||||            |||||||||||||||||||
Sbjct: 561 tcctgtactcagcggtaactgcccaatgggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 502

                                                                       
Query: 49  tgtgtgtgtgcacgtgcgcgcgtgcgtgtgcgtacgtgcgtgtgcgcgtgcgtgtgcgta 108
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtgtgtgtgcacgtgcgcgcgtgcgtgtgcgtacgtgcgtgtgcgcgtgcgtgtgcgta 442

                                                                       
Query: 109 cttgcatgtgcacatgcgtgtacccagtaaagagactctggaccttccttcctggctctt 168
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttgcatgtgcgcatgcgtgtacccagtaaagagactctggaccttccttcctggctctt 382

                                                                       
Query: 169 tgcttatggtcttctttacttcagttttgaaatataaacaaactgaacagttacaaaaac 228
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 tgcttatggtcttctttacttcagttttgaaatagaaacaaactgaacagttacaaaaac 322

                                                                       
Query: 229 taagggaaacaaggattatttatttattttgaaatattt---attaaatattttttttat 285
           |||||||||||||||||||||||||||||||||||||||   |||| ||||||| |||||
Sbjct: 321 taagggaaacaaggattatttatttattttgaaatattttttattagatattttctttat 262


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)