Query= MSMg01no158_l16.b1 MSMg01no158_l16.b1 CHROMAT_FILE:
MSMg01no158_l16.b1 PHD_FILE: MSMg01no158_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:18 2005
(314 letters)
>mm_chr5_55986238_55986956
Length = 719
Score = 230 bits (119), Expect = 7e-65
Identities = 122/123 (99%)
Strand = Plus / Minus
Query: 4 ggaattctaagtaaacttattgaaaccatttggaagatttggaaatgaatttgattttta 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ggaattctaagtaaacttattgaaaccatttggaagatttggaaatgaatttgattttta 659
Query: 64 aatttttgttcagggatcaaagagagggaaataaaatacctttctttagaatacaacatg 123
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 658 aatttttgttcagggatcaaagagagggaaatgaaatacctttctttagaatacaacatg 599
Query: 124 ctt 126
|||
Sbjct: 598 ctt 596
Score = 217 bits (112), Expect = 9e-61
Identities = 144/158 (91%), Gaps = 11/158 (6%)
Strand = Plus / Minus
Query: 111 agaatacaacatgctttcctaaaaatatatagtgttcaagatttgcagcactgaaaactt 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 agaatacaacatgctttcctaaaaatatatagtgttcaagatttgcagcactgaaaactt 406
Query: 171 -----gaaatcttctctgttcctgtacgtctgagttgt-aaatcagaaatggttattaaa 224
|||||||||||||||||||||| |||||||||| ||| |||||||||||||||||
Sbjct: 405 gaaaagaaatcttctctgttcctgtacatctgagttgtaaaaacagaaatggttattaaa 346
Query: 225 tatatgaa-aactggta-gattactgtataatctacca 260
|||||||| | || || | ||||||||||||||||||
Sbjct: 345 tatatgaatacct--tatg-ttactgtataatctacca 311
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 314
Length of database: 719
Length adjustment: 9
Effective length of query: 305
Effective length of database: 710
Effective search space: 216550
Effective search space used: 216550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no158_l16.g1 MSMg01no158_l16.g1 CHROMAT_FILE:
MSMg01no158_l16.g1 PHD_FILE: MSMg01no158_l16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:18 2005
(286 letters)
>mm_chr5_55839931_55840616
Length = 686
Score = 543 bits (281), Expect = e-159
Identities = 284/285 (99%)
Strand = Plus / Plus
Query: 1 atctaaaagacattgaacacggaattaatatgttatgattattgatttccacaaccctag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atctaaaagacattgaacacggaattaatatgttatgattattgatttccacaaccctag 260
Query: 61 agtatattattatctggtttgggatatataaacatagcactgaatgaatgagaaaggata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtatattattatctggtttgggatatataaacatagcactgaatgaatgagaaaggata 320
Query: 121 tgaatataaataaatcctgatcccagcaattgaagccctctagaaagataaaagattgca 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaatataaataaatcctgatcccagcaattgaagccctctagaaagataaaagattgca 380
Query: 181 actggagataatctataacattttccaatgcacaagcctcgattttgttaactgtaggtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actggagataatctataacattttccaatgcacaagcctcgattttgttaactgtaggtt 440
Query: 241 taatgtgccacacagggaggataagacagaatgtactttctttgt 285
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taatgtgccacacagggaggataagacagaatgtactttctttgt 485
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
