BAC Information

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BAC

Clone NameMSMg01-158L19
Chromosome5 (Build37)
Map Location 17,862,394 - 17,862,709
singlet/doubletsinglet
Overlap geneGnai1
Upstream geneLOC100041749, LOC100041832, Speer4f, EG630927, Sema3c, Cd36, Gnat3, LOC100041818
Downstream geneLOC668167, 4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158L19.T7 (MSMg01no158_l19.b1)MSMg01-158L19.TJ (MSMg01no158_l19.g1)
ACCAG358864AG358865
length746745
length of high quality
(start - end)
320 (46 - 365)289 (71 - 359)
definitionCHROMAT_FILE: MSMg01no158_l19.b1 PHD_FILE: MSMg01no158_l19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:19 2005CHROMAT_FILE: MSMg01no158_l19.g1 PHD_FILE: MSMg01no158_l19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTGCTTTATCAGGTTTTCATTTTGCATTACTTTAGCCATTTCCCA
GAGCCTTAGTTATCTGAGAGGCAACATGTTCCCTTGGACGAGTGGACATG
CCATTTCCCCCTGGGTTGTGTGCTTCTGTGTCCCTGTCTATTTGTGTTAG
TAGTTATTCTAGTTGGAGCTACTGGTTGTGTCATTGTGTGCTTTGCATAT
GCGGAGTTTCTCTTGAATCCACTTCCCGTCCTCCCACTTCTAGCTCCAGG
CTCCCTCTGCCTCACAGCCTCCTTGTTGAATATTTCTCTGCTTCTTCCTG
GCCTTTTCCCTTTGTCGCTTTTTTTCACCCCCCCCCGCCTTCTTATTTAT
TNTTGNNTTNTCCATTGCCCCCCAAATANNCATCTGAAATTAGACCCGGC
TCCTCTCCGCCAGCATCTCAGCGTTTCCAACAGGAGCAGTTAACAGCCAT
TAAGAACATGTGCACCTGATGTCTAGTGTTCGCTCTTCTTGTCTGCCCGA
GTTTCCCTTCTGTGAACCCCCCACCCACAAAGTCCTTATGTTTTCTCTGT
GTCCCCACTTTCTTTACAGGCCTTTTACCTTGTCATGTGTACCTGTTGCG
CCCATCACTTAACAACATTGTCGAATACATTTCTCATACATTTTCCCCCT
GTCTGTCCCTACCCCTTATCCTCCCCCCTTTTTCTTCTCCCTCTCA
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTAAGAAGTTCCATTTTCCTGGAATGAAG
GAGGTTCTCAGGAGTCAATGCAGGTGACCTTAGCAGAAATGCCCAACAGT
TGGGATATGAACTCTGCAGAGACCACCTCTAGTAGCCAGACAAGAACCCC
AGTGGATGGATGGGGACACTAACCCACCTGCAAAACTTTTGACTCAAAAT
TGGTCCTGTATAAAAGAATTGCAGGGACAAAAATGGAGCAGAAACTAAAG
GTGGCTGACCAGTGACTGGCCCATGTAGAGACCCATCCCTTGGGCAGGCA
CCAATCCCTCACTCTATTACTGCACCCTATGATGTGCTTGCAGACAGGAG
CCTAGCATAGCAGCCCTCTGAGAGACACTATCCAGGAGCTGACTGAGACA
GATGCAGATACCCACAGACAAACATTGGACAGAGGTTGGGGACCCCTGTG
GAAGAGTTAGGGTTAGGATTGATGATCCTCAAGGAAATGGCAACTCCAAA
GAAAACCAACAGTGTCAACTCACCTGGACCCATAGGAACTTCCACAGGCT
AAGCCACCAACCAGAGTGCATACATTGGCTGGCTCAAGGTCCCTGACACA
TATGCAGAGGGCTGCCATGTTTGGCCTCAGTAGGAGAGAGTTCACCTGAT
CCTGCAGAGACTTGATGTGGCAGGCTGTGGGGGGGGTGCCCGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_l19.b1 MSMg01no158_l19.b1 CHROMAT_FILE:
MSMg01no158_l19.b1 PHD_FILE: MSMg01no158_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:19 2005
         (320 letters)



>mm_chr5_17862191_17862910
          Length = 720

 Score =  542 bits (280), Expect = e-158
 Identities = 307/316 (97%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttgctttatcaggttttcattttgcattactttagccatttcccagagcctta 63
           ||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||
Sbjct: 519 ggaattcttgctttatcaggtttccatttttcattgctttagccatttcccagagcctta 460

                                                                       
Query: 64  gttatctgagaggcaacatgttcccttggacgagtggacatgccatttccccctgggttg 123
           |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 459 gttatcagagaggcaacatgttcccttggacgagtcgacatgccatttccccctgggttg 400

                                                                       
Query: 124 tgtgcttctgtgtccctgtctatttgtgttagtagttattctagttggagctactggttg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tgtgcttctgtgtccctgtctatttgtgttagtagttattctagttggagctactggttg 340

                                                                       
Query: 184 tgtcattgtgtgctttgcatatgcggagtttctcttgaatccacttcccgtcctcccact 243
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 339 tgtcattgtgtgctttgcatatgtggagtttctcttgaatccacttcccgtcctcccact 280

                                                                       
Query: 244 tctagctccaggctccctctgcctcacagcctccttgttgaatatttctctgcttcttcc 303
           ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| 
Sbjct: 279 tctagctccaggctccctctgcctcacagcctccttgctgaagatttctctgcttcttct 220

                           
Query: 304 tggccttttccctttg 319
           ||||||||||||||||
Sbjct: 219 tggccttttccctttg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)