BAC Information

Click to search

BAC

Clone NameMSMg01-159A18
Chromosome5 (Build37)
Map Location 110,728,221 - 110,886,286
singlet/doubletdoublet
Overlap genePole, P2rx2, Gm1679, 2410025L10Rik
Upstream geneEG384220, EG636052, EG384221, LOC667159, LOC667171, Tpte2, EG667185, LOC671695, LOC636173, LOC624831, LOC100041734, LOC100042749, LOC667198, 4930522L14Rik, LOC667243, Plcxd1, Gtpbp6, LOC675812, Chfr, Golga3, D5Ertd585e, Pgam5, Pxmp2
Downstream geneGalnt9, Noc4l, Ddx51, Ep400, Pus1, Ulk1, Hscb, Chek2, Ttc28, Pitpnb, Mn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159A18.T7 (MSMg01no159_a18.b1)MSMg01-159A18.TJ (MSMg01no159_a18.g1)
ACCAG359092AG359093
length739725
length of high quality
(start - end)		274 (44 - 317)229 (76 - 304)
definitionCHROMAT_FILE: MSMg01no159_a18.b1 PHD_FILE: MSMg01no159_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:41 2005CHROMAT_FILE: MSMg01no159_a18.g1 PHD_FILE: MSMg01no159_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,886,019 - 110,886,286)(110,728,221 - 110,728,449)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGCTCTGTTTGAAACCCAGGCAGATGTCCAACTCTCACAGTGATAAT
AGGCCAATCACTTGGTTTTCGGTCATTTGTGTCATAATTCAGACCATTTT
CCCTAGACTGTACATAGGCCATACTCAGGCTTGAGATGAGACTACCTGCA
GATAGTCTTCTTTTGCTTGTCACTTTCATGCAGTCTGACATCGTCCACCC
CAGCATCCAGAACTGGGCTCTTTCACAGAACCAAGAAGTGTAATAGACAT
AATAATGAAGGCCTGGATCTGTTTTTTTTGAGCTTGGGNCTGGGGAGGAG
GGNAGGTTGTTTTGTGTTTCCCCCCCCCCCCCCCANGGNNNAGGAAGNGA
NANNGGNNAGNNNANGAGAGGAAAGNNGGAGGNNNAANGGGGNGGGGGGG
GAGGAANAGNNGAGGGGNGGNNCCNACAGGCAGNNACCAGGANGGGNANC
CANAGGCAACAGCCAGGGGCNCAAGAAACCCAAGCCACAGCCCNAACCAC
ACNNCCAAGGACAAAAGGCAGCCAACAAGCACCAGACCCAGAAGNCAAAA
AGAAAACGGGACCACAAAAGACAGAGCCACGGAGGACACCACAGGGCAGC
AAAACAGCAAGGNCCCACACCCCCAACAGCAAAGCAGAGAACAAAAAAAA
CAGGGACCCGAACCNGGAAGCCACCAGGAAAGACAACCG

CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTGAGTATCAGGCCCTAAAGGGTG
CTCAGCAGGTCAGGACAGACCTAGACTCTGAACTTGGAACCTGTCCCATC
ACTTCTTTCCAGTGCCAGCCAGTCGCAGTGAATACCATCGGATTCAGCAT
CAGCTGGAGTCGGAGAAGTTTCCCCCTTTGTTTCCAGAGGGGCCAGCACG
GGCCTTTCACGAGCTGTCCCGTGAAGAACAGGCTAAATACGATAAGAGGA
GGCTGGCAGGTGAGCACCTGGTGAGCCACAGCCTGATAAGCAGTGGCTCC
TTGGATCAGAGGTATGATTTTATTGCCCCCTCACGCCCAGTAGGGTTTTA
CATTTCAGTTATTTTCTTCCCGCCGAGTGTTCCTTTCTTTCTCCTTTACA
AGGCTCAGGAATTATCCTTTTTGCCCCAGCCTTGGGTTTTAGGTACCTAA
TTCCTTTCCGAATGGTTTCTCTTTTCCCCACAACTTTTTTAGTGTTTTCT
TTTTTTTTTTTATTTTCCCCCCCCTTTTCTCCTTTCTCCTCTTCTTTTCC
CACTCTATCTTCCTCCTTTTTTTACGTAAAAGAAAAAAATAATCTCTAAA
TTCNTCCTTCTACCTCACCACCCACCACTTTCTTATTAGACAATCCTNNN
NNNNNCNNTAAGGGCCCTTCTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_a18.b1 MSMg01no159_a18.b1 CHROMAT_FILE:
MSMg01no159_a18.b1 PHD_FILE: MSMg01no159_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:41 2005
         (274 letters)



>mm_chr5_110885815_110886487
          Length = 673

 Score =  482 bits (249), Expect = e-140
 Identities = 264/269 (98%), Gaps = 1/269 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagctctgtttgaaacccaggcagatgtccaactctcacagtgataataggccaa 64
           ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 472 gaattcagccctgtttgaaacccaggcagatgtccaactctcacagtgataata-gccaa 414

                                                                       
Query: 65  tcacttggttttcggtcatttgtgtcataattcagaccattttccctagactgtacatag 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 413 tcacttggttttcggtcatttgtgtcataattcagaccattttccctagactgtccatag 354

                                                                       
Query: 125 gccatactcaggcttgagatgagactacctgcagatagtcttcttttgcttgtcactttc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gccatactcaggcttgagatgagactacctgcagatagtcttcttttgcttgtcactttc 294

                                                                       
Query: 185 atgcagtctgacatcgtccaccccagcatccagaactgggctctttcacagaaccaagaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 atgcagtctgacatcgtccaccccagcatccagaactgggctctttcacagaaccaagaa 234

                                        
Query: 245 gtgtaatagacataataatgaaggcctgg 273
           |||||||||||||  ||||||||||||||
Sbjct: 233 gtgtaatagacatgttaatgaaggcctgg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 673
Length adjustment: 9
Effective length of query: 265
Effective length of database: 664
Effective search space:   175960
Effective search space used:   175960
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no159_a18.g1 MSMg01no159_a18.g1 CHROMAT_FILE:
MSMg01no159_a18.g1 PHD_FILE: MSMg01no159_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:41 2005
         (229 letters)



>mm_chr5_110728021_110728649
          Length = 629

 Score =  435 bits (225), Expect = e-127
 Identities = 228/229 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgagtatcaggccctaaagggtgctcagcaggtcaggacagacctagactctgaactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgagtatcaggccctaaagggtgctcagcaggtcaggacagacctagactctgaactt 260

                                                                       
Query: 61  ggaacctgtcccatcacttctttccagtgccagccagtcgcagtgaataccatcggattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaacctgtcccatcacttctttccagtgccagccagtcgcagtgaataccatcggattc 320

                                                                       
Query: 121 agcatcagctggagtcggagaagtttccccctttgtttccagaggggccagcacgggcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcatcagctggagtcggagaagtttccccctttgtttccagaggggccagcacgggcct 380

                                                            
Query: 181 ttcacgagctgtcccgtgaagaacaggctaaatacgataagaggaggct 229
           ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 ttcacgagctgtcccgtgaagaacaggctaaatacgagaagaggaggct 429


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space:   136400
Effective search space used:   136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |