BAC Information

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BAC

Clone NameMSMg01-160H07
Chromosome5 (Build37)
Map Location 126,353,595 - 126,353,905
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp664, 3110032G18Rik, Ncor2, Scarb1, Ubc, Dhx37, Bri3bp, Aacs, Tmem132b, EG231736
Downstream geneLOC100039178, LOC665760, LOC100040327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160H07.T7 (MSMg01no160_h07.b1)MSMg01-160H07.TJ (MSMg01no160_h07.g1)
ACCAG360123AG360124
length709705
length of high quality
(start - end)
315 (51 - 365)293 (77 - 369)
definitionCHROMAT_FILE: MSMg01no160_h07.b1 PHD_FILE: MSMg01no160_h07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:25 2005CHROMAT_FILE: MSMg01no160_h07.g1 PHD_FILE: MSMg01no160_h07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCTTCCCTGGGAAGACTTAAACTGTATCACACTTTCCTCAT
TAGTTTCCAATGACAAATGTACACGTGGCCCTATCAGAATCTACCCCGGG
GAACCAAGTAGTTTATTGGGCTTGTTTGCATGGTATGGGTACAAGGTTTC
TGCTGGGAGTATGAACAACCTCAGTGCATCCACACTAGGAGATCAACATG
CAAGGTGGTAACAATACAGATGGAGCCCCTTCAACCATCCGTCCCCAGCC
TCTATATGTGAACACTCTTGAGACCCCAGACTAACTGCAATTGGGGCAGA
ACTGCACACAAATATTTTTTACACACCTCCCCCCCTGGGTGAGAGGCCAA
TGACTCTCCCCATTACCTCCTTCCCCGAAAAAAAAAATGAGGGGGAGGCA
TCAACCATCCACAAGCCCGGACATGATGGTCACTTGTAGGCAGACACTAC
ATACAACCTGATGAAAAGGACCATATTTATAACAGGGACATTAAAGATCC
AAAGTATAGCAGACACATTGACATTATGTGCTGGGCCCTAGTCAGCCCCT
GAGTGCTGAGGTCCAGCCCTCTAGTGCGTTATTCTCTGTCAGACTATTAC
ACCCTTTTCTCTCTCATTAACACCAGATATTTTTGTTCTTTCTTAAATCG
AACTACTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAATTGATCCATTCCTATCTCCTT
TTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTCTACATAAAACCAG
AGACTGTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATG
GGCACAGGGGAAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTGTAAG
ATCGAGAATTGACAAATGGGACCTCATAAAATTGCAAAGCTTCTGTAAGG
CAAAGGACACCATCAATAAGACAAAAAGGCCACCAACACATTGGGAAAGG
ATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCTAATATATAAAA
AGAACTGAAGAATGCCCCACTCCAGAAAGCCAGATAACCCCATTAAAAAA
TGGGGCCTAGAGATAAATATTCTACATTTTAAAAAGCACATATTCAAATT
GACAACATAATGTACCTGCGAAAATGAAATTTTCAGGCAAATAGAACTAG
GGAACACACTGAGTACGGTAATCTTCAGATCCAAAAAGATAAACATCTCA
TGTTCCCAACCAAATGTGGACCTTAGTGTCATACCTTTTGATTTGTGCTC
CAATTACAGCGGCTGTATAATACAGGACGGCCAGAGGAGTAATATCCTCC
TCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_h07.b1 MSMg01no160_h07.b1 CHROMAT_FILE:
MSMg01no160_h07.b1 PHD_FILE: MSMg01no160_h07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:25 2005
         (315 letters)



>mm_chr5_126353392_126354106
          Length = 715

 Score =  601 bits (311), Expect = e-176
 Identities = 311/311 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccttccctgggaagacttaaactgtatcacactttcctcattagtttccaatga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccttccctgggaagacttaaactgtatcacactttcctcattagtttccaatga 263

                                                                       
Query: 64  caaatgtacacgtggccctatcagaatctaccccggggaaccaagtagtttattgggctt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 caaatgtacacgtggccctatcagaatctaccccggggaaccaagtagtttattgggctt 323

                                                                       
Query: 124 gtttgcatggtatgggtacaaggtttctgctgggagtatgaacaacctcagtgcatccac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtttgcatggtatgggtacaaggtttctgctgggagtatgaacaacctcagtgcatccac 383

                                                                       
Query: 184 actaggagatcaacatgcaaggtggtaacaatacagatggagccccttcaaccatccgtc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 actaggagatcaacatgcaaggtggtaacaatacagatggagccccttcaaccatccgtc 443

                                                                       
Query: 244 cccagcctctatatgtgaacactcttgagaccccagactaactgcaattggggcagaact 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cccagcctctatatgtgaacactcttgagaccccagactaactgcaattggggcagaact 503

                      
Query: 304 gcacacaaata 314
           |||||||||||
Sbjct: 504 gcacacaaata 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)