AATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAACCAATTTCCTAAGACATGAATTACCAAGAAATCTGTAGTT
CCTGAGGTCAGTGAACAAAGCAAGGTTGTATAAAATGAAGCATAGGTTTG
TAGTTAATCAGAAATCTCTTAAGCACATTTAGTTTGAATTTCAGTCTCCC
AAAACATGAAACTATAAGAACGCAAGAGTTCTATCCCATTTGTAATTTCT
CTTTACTATTTAAATGTGATGCCATGCTAGAAGGTAGCTCAGCTTTAGAG
TGCTTGCCCAGTATCCATAAAGTTCTGGGCTTGACCACAATACATGTAAG
AGAATAGAATAAAATAAAATTATATTCTTATATCACAATGTAAAATAAAG
ACAAAAAATGAGCAAATAAACATAGAACCAACACTACCAAATCTAAGAGA
AGGATTCCAGAAAATAGAGATCATGAAGACATAACCTGCTTTATAAAACA
ATCACCATACAGAATGAAACTAGGCAAAGTTAGTGAGAAGTGTTAGAAAA
GACAGAAATAAAGAATGGCTGAAGGTAGTAGGAATTAATATCTTTCATGA
AAACAACAAATAATTAACAAGATGATCACCAATTGAATTGAGTGTCATGT
GGTGTTTGCCACAAAACTAAACAATCTTTTTCAACTTCACAAATAAATCA
ATGCATTAAGCTCATGATTTT

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAAGTCAACCTGAACTACATAGTAAGACC
TAGTTTCAAGAATATAAGAATTAGAAATATAACCCTATGGTAGAGTGCAA
CCTAGCAAATGAATGTTAAAATTGGTGTTCTTGATTTCTTCTATGAAGTT
TGACTGACGTCTGCTTCTTCCAGGCAGTTGGACTTCGCTGGCACTCCTCT
TTGCAGATGCTTAGACAAATAGATATCTGATAATAACTCTTAGCAGTCTT
TACTCTTTATATCTTTTGGGGGAGGGAATAGTCTAGTAGTCTGGTCAGTT
TTATTTTTTTTTTTCCCCCCCCCCCCCCCGTTGTTGATATCCTATATTAA
TGAGCTTCCCCCCCCCCCGGAATAAAAACCGTCTCCCCATATGAGTGCCA
TTTTTCTTATATAATTCCCCGCCCCCCCTATACGTGTTTGTTCCTATATT
TCCTTCTCTCCCCCTTCCTTTCTTTTTCCCATTTCCCTCTAACGCACCTT
CCCCCCCCTGTTCTTTTTTTTTTTTCCCCTATTTCTTCCCCTTTTCCCTT
CTTTTTTCCTCTATTTTTCAACCAAACCTATCTATTTCGTATCGCTAATA
ATTACCCTTCTCATTTCTATTCATTTTTTTTTAAATACTCTTCTTCCTTT
CCCCCCCTTTTTCCTCCCCCTTTTTCCCATTTATTTCTATAGTAGCCCTC
ATATTCATATTTTTATTACCCATCTCCCAC

Query= MSMg01no160_j11.b1 MSMg01no160_j11.b1 CHROMAT_FILE:
MSMg01no160_j11.b1 PHD_FILE: MSMg01no160_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:35 2005
         (635 letters)



>mm_chr5_16790754_16791788
          Length = 1035

 Score = 1181 bits (611), Expect = 0.0
 Identities = 626/631 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaccaatttcctaagacatgaattaccaagaaatctgtagttcctgaggtcagt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaccaatttcctaagacatgaattaccaagaaatctgtagttcctgaggtcagt 264

                                                                       
Query: 65  gaacaaagcaaggttgtataaaatgaagcataggtttgtagttaatcagaaatctcttaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaacaaagcaaggttgtataaaatgaagcataggtttgtagttaatcagaaatctcttaa 324

                                                                       
Query: 125 gcacatttagtttgaatttcagtctcccaaaacatgaaactataagaacgcaagagttct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcacatttagtttgaatttcagtctcccaaaacatgaaactataagaacgcaagagttct 384

                                                                       
Query: 185 atcccatttgtaatttctctttactatttaaatgtgatgccatgctagaaggtagctcag 244
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atcccatttgtaatttctgtttactatttaaatgtgatgccatgctagaaggtagctcag 444

                                                                       
Query: 245 ctttagagtgcttgcccagtatccataaagttctgggcttgaccacaatacatgtaagag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctttagagtgcttgcccagtatccataaagttctgggcttgaccacaatacatgtaagag 504

                                                                       
Query: 305 aatagaataaaataaaattatattcttatatcacaatgtaaaataaagacaaaaaatgag 364
           ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 505 aatagaataaaataaaattatattcttatatcaaaacgtaaaataaagacaaaaaatgag 564

                                                                       
Query: 365 caaataaacatagaaccaacactaccaaatctaagagaaggattccagaaaatagagatc 424
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 caaataaacatagaagtaacactaccaaatctaagagaaggattccagaaaatagagatc 624

                                                                       
Query: 425 atgaagacataacctgctttataaaacaatcaccatacagaatgaaactaggcaaagtta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atgaagacataacctgctttataaaacaatcaccatacagaatgaaactaggcaaagtta 684

                                                                       
Query: 485 gtgagaagtgttagaaaagacagaaataaagaatggctgaaggtagtaggaattaatatc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gtgagaagtgttagaaaagacagaaataaagaatggctgaaggtagtaggaattaatatc 744

                                                                       
Query: 545 tttcatgaaaacaacaaataattaacaagatgatcaccaattgaattgagtgtcatgtgg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tttcatgaaaacaacaaataattaacaagatgatcaccaattgaattgagtgtcatgtgg 804

                                          
Query: 605 tgtttgccacaaaactaaacaatctttttca 635
           |||||||||||||||||||||||||||||||
Sbjct: 805 tgtttgccacaaaactaaacaatctttttca 835


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no160_j11.g1 MSMg01no160_j11.g1 CHROMAT_FILE:
MSMg01no160_j11.g1 PHD_FILE: MSMg01no160_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:35 2005
         (268 letters)



>mm_chr5_16867389_16868056
          Length = 668

 Score =  503 bits (260), Expect = e-147
 Identities = 266/268 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagtcaacctgaactacatagtaagacctagtttcaagaatataagaattagaaatata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 aaagtcaacctgaactacatagtaagacctagtttcaagaatataagaattagaaatata 245

                                                                       
Query: 61  accctatggtagagtgcaacctagcaaatgaatgttaaaattggtgttcttgatttcttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 accctatggtagagtgcaacctagcaaatgaatgttaaaattggtgttcttgatttcttc 185

                                                                       
Query: 121 tatgaagtttgactgacgtctgcttcttccaggcagttggacttcgctggcactcctctt 180
           |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 184 tatgaagtttgactgacgtctgcttcttccaggcagttggacgtcactggcactcctctt 125

                                                                       
Query: 181 tgcagatgcttagacaaatagatatctgataataactcttagcagtctttactctttata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 tgcagatgcttagacaaatagatatctgataataactcttagcagtctttactctttata 65

                                       
Query: 241 tcttttgggggagggaatagtctagtag 268
           ||||||||||||||||||||||||||||
Sbjct: 64  tcttttgggggagggaatagtctagtag 37


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 668
Length adjustment: 9
Effective length of query: 259
Effective length of database: 659
Effective search space:   170681
Effective search space used:   170681
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)