BAC Information

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BAC

Clone NameMSMg01-160J13
Chromosome5 (Build37)
Map Location 70,863,640 - 70,863,996
singlet/doubletsinglet
Overlap genenone
Upstream geneYipf7, Guf1, Gnpda2
Downstream geneGabrg1, Gabra2, LOC635092, 4930503B16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160J13.T7 (MSMg01no160_j13.b1)MSMg01-160J13.TJ (MSMg01no160_j13.g1)
ACCAG360226AG360227
length744721
length of high quality
(start - end)
320 (44 - 363)286 (73 - 358)
definitionCHROMAT_FILE: MSMg01no160_j13.b1 PHD_FILE: MSMg01no160_j13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:36 2005CHROMAT_FILE: MSMg01no160_j13.g1 PHD_FILE: MSMg01no160_j13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGGGACAGAAATGATCCATCAGAGCATCTGGCTTTTTGTGGCTTCCA
AAAATTGAAGGAGGTTGTCAAATTTGCCACCCCTAATTTAAAAATTTAAG
ACAATATAGCAATGCAGGTTGAAACACGTTCATTATGAGTAGGGAAAGTG
ACATGTAAGAGCAGGACAGCAGTATATGTCCTAGTCTGAGACTGAATTCT
AAAGATAGTTTCCTGAATTTCAAATGGACTGAGTCCTTCATATATATATA
TGAATATAGGAAGTTGAAGGAATTTTCCATATCTTAATTGAAATGGATTT
AAAACTTGAACTTTTTTTATTATTCCCCCCCCCCCCCCCATCTAAATAGT
ATTAGTTATATAATATCTAACCCCCCGACTTAAAAAGAGATTAAATATTT
AATGATATTCAAAAGTCCTTCCAAGATGTTTGAAAGAACATTGTTCAAAA
GCAGTGCATTTGGGACCCCCACTAAGCCTGACCAATTGTAGAGTTCTGAT
TTGATCTCTCTTCATTAAACTTTACACATATTTACATGTTATAACACACA
CACTTTGAGGGTCTCAATACTCATAAATCTTCCTGTACGTACTGTTACCA
CTTCTTGATCTCTGATATCCTTCTGAAATTTTGGTTAAATTTCCCTTACA
AACCCCACCAAATTAACCCTTGATCCTTCTTTCAACACCTTTTT
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGA
AGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATC
AAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAA
AAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACAC
TCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCA
GTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCAGC
AATACCTCTCTTGGGCATATACCCACAAGATGCCCCAACTGGTAAGAAGG
ACACATGCTCCACCATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGC
TGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTG
GTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTA
TGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAG
GTAACACATTCACAAAGAAACTCACACAATATGTATTCACTGATAAGAGG
ATATTAGCCCCAAACCTAGGATACCCAGGATATAAGATATAATTTGCTAA
ACACATGAAACTCAAGAAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_j13.b1 MSMg01no160_j13.b1 CHROMAT_FILE:
MSMg01no160_j13.b1 PHD_FILE: MSMg01no160_j13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:36 2005
         (320 letters)



>mm_chr5_70863539_70864258
          Length = 720

 Score =  509 bits (263), Expect = e-148
 Identities = 313/357 (87%), Gaps = 43/357 (12%)
 Strand = Plus / Minus

                                                                       
Query: 7   attctgggacagaaatgatccatcagagcatctggctttttgtggcttccaaaaattgaa 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 attctgggacagaaatgatccatcagagcatctggctttttgtggcttccaaaaattgaa 399

                                                                       
Query: 67  ggaggttgtcaaatttgccacccctaatttaaaaatttaagacaatatagcaatgcaggt 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 ggaggttgtcaaatttgccacccctaatttaaaaatttaagacaatatagcaatgcaggt 339

                                                                       
Query: 127 tgaaacacgttcattatgagtagggaaagtgacatgtaagagcaggacagcagtatatgt 186
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tgaaacatgttcattatgagtagggaaagtgacatgtaagagcaggacagcagtatatgt 279

                                                                       
Query: 187 cctagtctgagactgaattctaaagatagtttcctgaatttcaaatggactgagtccttc 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 cctagtctgagactgaattctaaagatagtttcctgaatttcaaatggactgagtccttc 219

                                                                       
Query: 247 atatatatatat------------------------------------------gaatat 264
           ||||||||||||                                          ||||||
Sbjct: 218 atatatatatatatatatatatatatatatatatatatatatatatatatatatgaatat 159

                                                                    
Query: 265 aggaagttgaaggaattttccatatcttaattgaaatggatt-taaaacttgaactt 320
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 158 aggaagttgaaggaattttccatatcttaattgaaatggattataaaacttgaactt 102


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)