BAC Information

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BAC

Clone NameMSMg01-160M08
Chromosome5 (Build37)
Map Location 96,328,779 - 96,329,086
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC624655, LOC100041166, LOC665469, LOC622894, EG666121, LOC666125, EG666133, LOC100041296, LOC100041253, LOC100041264, EG624049, EG666159, LOC666164, EG666169, D5Ertd577e, LOC100041354, LOC100040503, LOC666187, EG622731, LOC100041380, EG666203, EG666209, LOC665943, LOC433921
Downstream geneCxcl13, EG666231, Cnot6l, LOC100040559, Mrpl1, Fras1, Anxa3
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160M08.T7 (MSMg01no160_m08.b1)MSMg01-160M08.TJ (MSMg01no160_m08.g1)
ACCAG360350AG360351
length728684
length of high quality
(start - end)
313 (20 - 332)70 (115 - 184)
definitionCHROMAT_FILE: MSMg01no160_m08.b1 PHD_FILE: MSMg01no160_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:49 2005CHROMAT_FILE: MSMg01no160_m08.g1 PHD_FILE: MSMg01no160_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXCGCGGAATTCATATCACAAAGCTACTTCCCA
CAACATTTTCACAAAGTACTACCATTTTCTGTTACAGAAAAGACTCTACC
TGACCTGAAGAGGAACAATCAGATATTCTCCAACGACAAAGCCTTGTCAA
GCACACTGGTGGACAGGATGAAATAGGACATGTACATCTAAGTGTGTGGT
GGCTGTGTTCTCTCAATAGTCTGGGAGAGCAGAGGCAAATGGTCTGAATG
TACAGAAACAGATGGGAAGGTTCTGGAAGTTTACCAGCATCTAGTTCTTG
TCACTTTTTGAAGCTCACCAGCTTTAACATTTTTCCTCTCTCCTCCCCCC
CACAAGAGAAAAGAAAGGAAGGAGGTAGGGAGGGAAGCCCCCCCCTTATT
ATAAAAAAAAAGCGGGGGAAGGGGTCTTTTCAACCTTTTCTTTCCCCCCC
TCTATTCTTTTTATCCCTCTCACTTTTTAACTCACCTCTCCCTCCCTCCT
ACCCCATCCATCCCCATTTTTTTTTTTTCTCTCTTCTTTATTTTTTTATC
TCCTATTATTTTTTCTCCCCACCAACACTCATATTCTTTATTTTATTTCT
ATATTTATTCATACCCTCCACTTTATTCTCCCCTTTCTCCTATATTTTTC
TCCTCTTTTTTCTCATTTTCATTCTCTATTACATTAATCAATATCACTCC
TCCTTTATTTTTCTTCCTCTATTTCTTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTGTCACTTGTTCTAAGTAACAAACATTTTGACTGAAAAGTG
AGCTGTTGGGTTTGAAAGGTTTTCTTCTTCTCTCCACCCATAAAACCCAA
AGAAACACCTTTCTAAGGGGTTAAAAATTTGTTTACCGACTTTTATTTGG
TTGGAATCCTATTTGTATGACTTTTGCGAATTAAAAGTAAATAGATTAGG
TAGAGACATTAAACTTATTTTTCTAAATCAGGAACTTAAACTGAATTTTT
GAATTTGAAAACAGAGAACATTTAGGCTAATGATTTTTTTGCACCACCCC
ACCTCCGGAAAAGGCACCATGATCCCCAAATTTAAAATTCCCCCCCAAAA
AAAGGAAAGAACATCTTTAACCTGCTTATTTACCAAAGTTTAAAAATAGG
GGGCCAAAAGCATCTTTCATAATTGTCACCTGAATGCTTAAAACGATAAA
AAAAAACCCTTATGGGTTCTGAGCAAGAGCCACAAAAAGAAAACTAGGAA
GGAAATCAAAAGGCCGGAAGCCTGTTTAGGAATAGGATACGCAAGAGCAT
GATTGCTTGTTCTGACCAATGGTTTTCGGGTCAACGTCCCCGGTAAAAGT
CCTGAAGAATAATCCATATCTCTGCTCAATTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_m08.b1 MSMg01no160_m08.b1 CHROMAT_FILE:
MSMg01no160_m08.b1 PHD_FILE: MSMg01no160_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:49 2005
         (313 letters)



>mm_chr5_96328575_96329287
          Length = 713

 Score =  565 bits (292), Expect = e-165
 Identities = 304/308 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatatcacaaagctacttcccacaacattttcacaaagtactaccattttctgtt 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 205 gaattcatatcacaaagctacttcccacaacattttcacaaagtactaccattttctgat 264

                                                                       
Query: 65  acagaaaagactctacctgacctgaagaggaacaatcagatattctccaacgacaaagcc 124
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 265 acagaaaagactctacctgacctgaagaggaacaatcagatattctccaaggacaaagcc 324

                                                                       
Query: 125 ttgtcaagcacactggtggacaggatgaaataggacatgtacatctaagtgtgtggtggc 184
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 325 ttgtcaagcacactggtggacaggatgaaataggacatgtagatctaagtgtgtggtggc 384

                                                                       
Query: 185 tgtgttctctcaatagtctgggagagcagaggcaaatggtctgaatgtacagaaacagat 244
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 385 tgtgttctctcaatagtctgggagagcagaggctaatggtctgaatgtacagaaacagat 444

                                                                       
Query: 245 gggaaggttctggaagtttaccagcatctagttcttgtcactttttgaagctcaccagct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gggaaggttctggaagtttaccagcatctagttcttgtcactttttgaagctcaccagct 504

                   
Query: 305 ttaacatt 312
           ||||||||
Sbjct: 505 ttaacatt 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)