BAC Information

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BAC

Clone NameMSMg01-160N23
Chromosome5 (Build37)
Map Location 17,931,242 - 17,931,499
singlet/doubletsinglet
Overlap genenone
Upstream geneSpeer4f, EG630927, Sema3c, Cd36, Gnat3, Gnai1, LOC100041818
Downstream geneLOC668167, 4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160N23.T7 (MSMg01no160_n23.b1)MSMg01-160N23.TJ (MSMg01no160_n23.g1)
ACCAG360426AG360427
length863795
length of high quality
(start - end)		---273 (70 - 342)
definitionCHROMAT_FILE: MSMg01no160_n23.b1 PHD_FILE: MSMg01no160_n23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:57 2005CHROMAT_FILE: MSMg01no160_n23.g1 PHD_FILE: MSMg01no160_n23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGCGCCTTCTTATTTGCGGTGTTTTACGGTCCTGTGGGGTGCGGTCCGC
GGGATTCTGGGGTTCACTGCCGGTTCTTTGGGGGCTGTGCTGCCGCGGGG
TGATGGCGGGGGCTCTTGGGTGGGGGGGGGGTCACCGGTGTCGTTCCCGT
GCCCTCCGGGTGTCCTCTTAGCTTCTCTGGCGAGGGGCGGGGGCTTCTCG
CCTTCGCNCTCCACCGTCCTCGCCGGTCGCCGGTCTCACCCCCTCGCCTC
CCCCCGGGGCCCGGGGGCGTCGCCCCCNTGCCCCCCCCCACCGGCCGGCA
CCGCCGCTCCCCCCCTCCCCNTCTTTTNGTNGGGGGGGCCCCTCNCGTGC
CGCGCCNGTCCGGCCNTGGTATCCCTGCCTCCTCCNNTGTCCTCGCCCNN
GCGGGCGGCCGCCTTTTTTTTTTTTTTGTCCGCCCCCCGCCGCCCCCCCG
CCACCCCTCCTGGCTNGGGGGTCCCTGCCGGGCCCCNNNNTGGCCGGGGG
GGGGTGGGGGGGGCGGGGGGAGGGGGCGGGGGGGCGGGCCTCTGCCGGCC
CCCCNNNNGCCCCCTNNGGTAGCGGCCGGGTCTTGCCCGCGCNNTNTCTC
CGGGCTGCCCCGCCTCCCTNGGGGTNCGCTCGGGGGNNTTCCGGCGGTTG
GGGCAACCGCGTGTGCNNTCTGGGCGCCCCGGTGGGGTTTCCTCGTGCGG
TTATTTGGGGGGGNNAACTGTGCGACTGGTGGGTTGGGTGGGGGNTATGG
CGTTCNNGCCTCGGCGNTGGTTTTTTGGCGGGGGGGGCTTGGGTGGGTNN
ATCTGGGGGTCGGGGCGGGGGGTGGTTTTTTTTGGTTTGGGGGTGGTGAA
ATTGGGGGGTTTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGGAAGCTGTTTACACTTGGACAAACAAGT
TTAACTAACAAAACATTAACAAAAAAAGCCTCTGGTGGAGAAGGAAGCAT
GAGCTAAAACAGATAGGCATCCATTAAACCTGTCTGTAAGGAAAAAATGA
TTGCATCTCTCACAATTATAAATTTGTGATATACTGCTCTGGTAACCACA
CAGATTCGAGGAGAAAGACTATTGACTAAATCATGGCCAAATTAATTAAA
GCAAGTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGNNNNTNNN
NNANTTTTTTTTTCCCCCCTCTCCCTCCCATTCTTCTTTTTTTTTCCTTT
TTTATTTTTTTCCCCCCCCCCACTAATTTATTAAACCCCCTTCCCCTTTT
AAATCTCATTTTTTTCTTCCTTCTTTCCCCTTCCCCCCATTCACATCTAT
TTTTACCTTTCTTTTTCATCTCTCCCCCCGCATGCTACTCTTCTCCCTTA
CTCTCTATTCCTCTATTCTCCCCCATATTTTTTAAATTTTATTTCACCTT
TTCTCTTCCACTTTTGTCCACGTTTGCTCTATTTAATTTTCCCCGACCTT
TTTGATCGATTTGTTACATAAACTCTTATTATCTTTATTATTTTTTTTTC
ACCAATATCTTCTCCTCTCCACCCAACGTTACACCCTTATATACCTATTT
ACAAAACTTAGCGCCACTATCTCACTTATTTTACCCCTTCCCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_n23.g1 MSMg01no160_n23.g1 CHROMAT_FILE:
MSMg01no160_n23.g1 PHD_FILE: MSMg01no160_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:57 2005
         (273 letters)



>mm_chr5_17931042_17931714
          Length = 673

 Score =  491 bits (254), Expect = e-143
 Identities = 257/258 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggaagctgtttacacttggacaaacaagtttaactaacaaaacattaacaaaaaaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggaagctgtttacacttggacaaacaagtttaactaacaaaacattaacaaaaaaagc 260

                                                                       
Query: 61  ctctggtggagaaggaagcatgagctaaaacagataggcatccattaaacctgtctgtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctggtggagaaggaagcatgagctaaaacagataggcatccattaaacctgtctgtaa 320

                                                                       
Query: 121 ggaaaaaatgattgcatctctcacaattataaatttgtgatatactgctctggtaaccac 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaaaaaatgattgcatttctcacaattataaatttgtgatatactgctctggtaaccac 380

                                                                       
Query: 181 acagattcgaggagaaagactattgactaaatcatggccaaattaattaaagcaagtttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagattcgaggagaaagactattgactaaatcatggccaaattaattaaagcaagtttt 440

                             
Query: 241 gtgtgtgtgtgtgtgtgt 258
           ||||||||||||||||||
Sbjct: 441 gtgtgtgtgtgtgtgtgt 458


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space:   175296
Effective search space used:   175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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