BAC Information

Click to search

BAC

Clone NameMSMg01-160O22
Chromosome5 (Build37)
Map Location 46,746,231 - 46,930,689
singlet/doubletdoublet
Overlap geneEG666103
Upstream geneQdpr, EG624224, Lap3, LOC100040762, Med28, 9630031F12Rik, 9630001P10Rik, 1600023N17Rik, Lcorl, LOC100041576
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160O22.T7 (MSMg01no160_o22.b1)MSMg01-160O22.TJ (MSMg01no160_o22.g1)
ACCAG360469AG360470
length730733
length of high quality
(start - end)		316 (45 - 360)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no160_o22.b1 PHD_FILE: MSMg01no160_o22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:02 2005CHROMAT_FILE: MSMg01no160_o22.g1 PHD_FILE: MSMg01no160_o22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,930,380 - 46,930,689)(46,746,231 - 46,746,517)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACCTTTAAATTGAGTCAATTTCCTGATCATTATCAATTAAGCTTGC
ATGCTTCGGAGTGTTTCCCAGTCTACCTTCTCAAGCTTGGTCAATTTTTA
ATATGATCCCTTTCTACTTGATATTGATTTTTCCATAACATCAGCTCAGT
CGAGTCTGTGATAGCATTATACCTGAAATGCCCTTTAAGTGATTATGGTC
TTCAAAATTCCAAAGACTTTATGCTTGTCCCATTAAATTGTAGAATTTAT
TTTAAATACTCTGCAGTTCATTAAAAGGGAATTCATTATAAACTAAGAAG
AAAGTGATTATTGTATATGCCCCCGCCTACTAAACATTTACTAAATTCAC
AATACCTCTAAAACTGACCACTATAGAAAAAAAGGTCTTAATTTTAAAAT
TATATTTTCAGGTATTTTTATCTTTTTATACAATTTCAAAAGAAACCTAA
TCTTGCTTCTCTTTTTGTTTTCATCCATTTTTGGAACAACTTATTTATTT
GCTCAATACAATTATTTTAAAAGAGTACTTGAATTATACCCAATCTGCTA
AAATAGGACCTCAGTACAAGACATAGTACTGGGGATGAAGGGAGAAACAT
GTCATTATAAATGGTACCATACTCCTGGCAAATGTAGAAGGTGTCCCTGA
AGAACTATTAGGACTATTAGTAATAACTGG

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATGATCTGAGACCATGAGGAAAA
AACATCTTTTCAAGGAAAAAAAAAAAAAAAAGAAGAAGAAGAAGGCAAGG
CAAGGGAGGGAGGGAGGAGGAGGCAGAGGAGGAAAGGAACTTTCCAACTT
TGAGAGTCAGAACATAGCAAGAGAATCACCAATTTTGCAGAAGGTGTCTT
GATTCTTCCTGTGCTAAAAGGTACACCCTGTTACAACAGCAGCAGCTGCT
CTAGCAGAGCCTTCTTCCCACTTGGGTAATTATTTTTGTGAAAACAAAAT
AGCAACAGCAGCATCTTCTAACCCCCCCCCCCAAAAGGAGCGCAGGGGAG
AAGAGAAAAAGAACTGGCCCCCGAGAAAAGGAAAGAAATGATGCCCTGGT
GGTCTAAGTGAAAGGCTGCTTCTCAAACATTTTCCTCAATTTGAGGTTGT
AAAATTTTCAGTCAAATTTGCTGAAGAGTCTATTTGTATCTTTTAGAAAA
GATTTGTTGACATAAAAACAGAATCTTTGTCTTCATTAAAAATATGGTCC
TGACAACTGTTCATGGTGATGAAAAGAATTTGGATATTCAAAGAAAGTTC
TTTCTTTCTCCTTTTCAGGCACTGAGAAAAAGGGTAAAATCCCTCTAAGG
GAGAAAGAGCCATTGTATGACTTGGTGCAAGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_o22.b1 MSMg01no160_o22.b1 CHROMAT_FILE:
MSMg01no160_o22.b1 PHD_FILE: MSMg01no160_o22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:02 2005
         (316 letters)



>mm_chr5_46930177_46930892
          Length = 716

 Score =  584 bits (302), Expect = e-171
 Identities = 308/310 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcacctttaaattgagtcaatttcctgatcattatcaattaagcttgcatgcttc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 513 ggaattcacctttaaattgagtcaatttcctgatcattatcaattaagcttgcatgcctc 454

                                                                       
Query: 64  ggagtgtttcccagtctaccttctcaagcttggtcaatttttaatatgatccctttctac 123
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ggagtgtttcccagtccaccttctcaagcttggtcaatttttaatatgatccctttctac 394

                                                                       
Query: 124 ttgatattgatttttccataacatcagctcagtcgagtctgtgatagcattatacctgaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ttgatattgatttttccataacatcagctcagtcgagtctgtgatagcattatacctgaa 334

                                                                       
Query: 184 atgccctttaagtgattatggtcttcaaaattccaaagactttatgcttgtcccattaaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 atgccctttaagtgattatggtcttcaaaattccaaagactttatgcttgtcccattaaa 274

                                                                       
Query: 244 ttgtagaatttattttaaatactctgcagttcattaaaagggaattcattataaactaag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ttgtagaatttattttaaatactctgcagttcattaaaagggaattcattataaactaag 214

                     
Query: 304 aagaaagtga 313
           ||||||||||
Sbjct: 213 aagaaagtga 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no160_o22.g1 MSMg01no160_o22.g1 CHROMAT_FILE:
MSMg01no160_o22.g1 PHD_FILE: MSMg01no160_o22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:02 2005
         (289 letters)



>mm_chr5_46746031_46746719
          Length = 689

 Score =  555 bits (287), Expect = e-162
 Identities = 287/287 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatgatctgagaccatgaggaaaaaacatcttttcaaggaaaaaaaaaaaaaaaagaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatgatctgagaccatgaggaaaaaacatcttttcaaggaaaaaaaaaaaaaaaagaaga 260

                                                                       
Query: 61  agaagaaggcaaggcaagggagggagggaggaggaggcagaggaggaaaggaactttcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaagaaggcaaggcaagggagggagggaggaggaggcagaggaggaaaggaactttcca 320

                                                                       
Query: 121 actttgagagtcagaacatagcaagagaatcaccaattttgcagaaggtgtcttgattct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actttgagagtcagaacatagcaagagaatcaccaattttgcagaaggtgtcttgattct 380

                                                                       
Query: 181 tcctgtgctaaaaggtacaccctgttacaacagcagcagctgctctagcagagccttctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcctgtgctaaaaggtacaccctgttacaacagcagcagctgctctagcagagccttctt 440

                                                          
Query: 241 cccacttgggtaattatttttgtgaaaacaaaatagcaacagcagca 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccacttgggtaattatttttgtgaaaacaaaatagcaacagcagca 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |