Query= MSMg01no160_p11.b1 MSMg01no160_p11.b1 CHROMAT_FILE:
MSMg01no160_p11.b1 PHD_FILE: MSMg01no160_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:04 2005
(316 letters)
>mm_chr5_83096807_83097523
Length = 717
Score = 584 bits (302), Expect = e-171
Identities = 308/310 (99%), Gaps = 1/310 (0%)
Strand = Plus / Plus
Query: 5 gaattccagatatcatttaaaatgggatcatgcaaacacatctgtaatcccaacactcct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagatatcatttaaaatgggatcatgcaaacacatctgtaatcccaacactcct 264
Query: 65 attgtcagatgaaactcagagacaaaagaatccctgggaatttcaggcaaattagctttg 124
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attgtcagatgcaactcagagacaaaagaatccctgggaatttcaggcaaattagctttg 324
Query: 125 aatattctgaaaaacaaaaacagtttctcacgaggtgaatgtaatggcaaagatccatag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatattctgaaaaacaaaaacagtttctcacgaggtgaatgtaatggcaaagatccatag 384
Query: 185 agtggatttcctccaaccaccccacaactgcccccctccacacactgtgacacaggatcg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agtggatttcctccaaccaccccacaactgcccccctccacacactgtgacacaggatcg 444
Query: 245 catgc-tgagtatgaacacacacatatgggcatatgcacacaaagacatcagttgtatac 303
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 catgcctgagtatgaacacacacatatgggcatatgcacacaaagacatcagttgtatac 504
Query: 304 aataaacaca 313
||||||||||
Sbjct: 505 aataaacaca 514
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 717
Length adjustment: 9
Effective length of query: 307
Effective length of database: 708
Effective search space: 217356
Effective search space used: 217356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no160_p11.g1 MSMg01no160_p11.g1 CHROMAT_FILE:
MSMg01no160_p11.g1 PHD_FILE: MSMg01no160_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:04 2005
(601 letters)
>mm_chr5_83230339_83231339
Length = 1001
Score = 1042 bits (539), Expect = 0.0
Identities = 581/595 (97%)
Strand = Plus / Minus
Query: 1 tctattatgagggtctaaggagtaataacttcttataaagtaggacaataatctaagttt 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 951 tctattatgagggtctaaggagtaataacttcttataaagtaggaaaataatctaagttt 892
Query: 61 atctgaacaaaataaaacccctgatctgaaaagtcaaacaagaaactacttgcaatagaa 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 891 atctgaacaaaataaaacccctgatctgaaaagtcaaacaagacactacttgcaatagaa 832
Query: 121 aagtttccttcccacatgtaaaattaaatctgataaagtatccctaaaacaaaaatatct 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 aagtttccttcccacatctaaaattaaatctgataaagtatccctaaaacaaaaatatct 772
Query: 181 acgcaagtaaaaatctttacaaaacaacttttcatttttactagtaacatcagtagatta 240
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 aagcaagtaaaaatctttacaaaacaacttttcatttttactagtaacatcagtagatta 712
Query: 241 gtgaaataaaatagtaaaatttgggtctacaggatcctatgaagaattacatattatata 300
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 711 gtgaaataaaatagtaaaatttgggtcttcaggatcctatgaagaattacatattatata 652
Query: 301 aatttaataaaattcaattatctcttaaaagccaaatacaccatttatgagaaatataga 360
|||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||
Sbjct: 651 aatttaataaaattcaattatctcttaaaagccaaatagagtattaatgagaaatatagg 592
Query: 361 aaaatgtaaagaatgttgtgttaataataccaggaatcaaggagaacaaaaatgaatgct 420
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 591 aaaatgtaaagaatgttgtgttaataataccaggaatcaaggagaaaaaaaatgaaggct 532
Query: 421 aaaagagtagttatttatttttttattacatattttcctcagttacatttccaatgctat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 aaaagagtagttatttatttttttattacatattttcctcagttacatttccaatgctat 472
Query: 481 cccaaaagtcccccataccctctcccctacttccctacccacccattcccattttttggc 540
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 471 cccaaaagtcccccataccctctcccctacttccctacccacccgttcccattttttggc 412
Query: 541 cctggcgttcccctgtactggggcatataaagtttgcgtgtccaaagggcctctc 595
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 411 cctggcgttcccctgtactggggcatataaagtttgtgtgtccaaagggcctctc 357
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space: 585681
Effective search space used: 585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
