BAC Information

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BAC

Clone NameMSMg01-161E05
Chromosome5 (Build37)
Map Location 111,905,514 - 112,048,177
singlet/doubletdoublet
Overlap genenone
Upstream geneGalnt9, Noc4l, Ddx51, Ep400, Pus1, Ulk1, Hscb, Chek2, Ttc28, Pitpnb, Mn1
Downstream geneA230057G18Rik, Cryba4, Crybb1, Tpst2, Tfip11, 2810002G02Rik, Hps4, EG625424, Asphd2, Sez6l, EG625464
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161E05.T7 (MSMg01no161_e05.b1)MSMg01-161E05.TJ (MSMg01no161_e05.g1)
ACCAG360713AG360714
length1,1451,211
length of high quality
(start - end)		419 (30 - 448)329 (69 - 397)
definitionCHROMAT_FILE: MSMg01no161_e05.b1 PHD_FILE: MSMg01no161_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:40 2005CHROMAT_FILE: MSMg01no161_e05.g1 PHD_FILE: MSMg01no161_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,047,772 - 112,048,177)(111,905,514 - 111,905,842)
sequence
NNGGGCTATGGCGCTATAGACTCACTAAGGGAGAGGATCCGCGGAATTCA
ACCCTATAAACAAAAACCCCATGATGAAACAGACTCTAATAAGGTCCTGC
GTTGTGCCTACCAAATGACCACAAGGAAACAGCTCAACCACCAGGCCTGT
CGTTAGCAGTGGGCAGAACAATGGGTTCTCTCAAACCCATGTGGCTGAGG
TGCCACATGGGCCTCGCTCACTGAGCGTGGTCTAGAAAGTCCATCCACCT
GTGGACCATGGTGCTTTGCTGGGAACAGGGTGCAGGGACATGGGGTCCAT
GACTAACACCCCCACCCACCCACACACACACACTTGTCTGAAACAGTGGA
AGTCACACATGCTGTAAGAATCATGTCCAGGGTGCTGGCTGCAGCAGCCC
TGATCCTGTGGAACCCTGTGGGTGGAATGAGCTGGGTCTGTAGGTCAGTT
TTTTTTTCCCCCCCCCCGAACTCTCTGCCTCTCTGATGCAACAACTGACG
GCCACAAGCCCTCAGCTTGGATGAGGGAGGGTAAGCCAGGCTAACAACCA
CATCTGGGAGACCCACGATGTCCCAAGGAAATATTTAACTTATTTCAGCC
AAGTTGGGTAATGGGCTTGCTCACCCCAGTGTGACTCCACCTCAGTGCTG
GGCAGTGCTCGTGGGGAGAAAGATGGTGGCTCTAAGGACATTCTTGTCCT
TTTCTACAGAAGTCACCTGCTGCTGGGATACAAGGAGCCATGGAAGCAGG
GAAGGGAGTGGAGGCTGAGACCATGTGAGCACATGGGGCTCTGGGAAGAG
AAACCTAACCACCTCGGCATGTATGTGAACACGGAAAAATGTCCAAATGA
TCAGTCATGCCTGTGGGTAAGAAGCCCATTTATCCTGATATGGCCTGCCT
TGGTCTGTTGTTCCCCCTTATTTCCCTTCACCTTGTGTGTTTGAAATTTT
TTTACTCTAGAAGTTTTTTTTTTCTTCTCAATACTTTTCAGCTTTTTTAT
AAGGAAATATAACTTTCTTTTTTTTCTCCTTCTTACTTCCTATTATTTTT
ATTTTTTCTTTTTTGGATTCTATCATCACTTTTCTTTCCTGGTAATATTA
TAATTTTTTCTTTTATTTCTTCATTTCCCTTTCATTTTCGTTCTG

NNTTCGCACGGAGCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGGACTCCTGTGGACACCCAAATCTGAAGGAG
GTCTTCATGCTTCTTATGTAGAGCGCGTGTGTGGGCCTGAGAGCAATGCG
CAGTCTCCCAATATTTCAACCGGCTCTAGATGACTACCCACACCTAGCAT
CCAGGAAATGTGTTGCAGGATCAGGGAGTAAAAGAAAACCAGTCTATACC
TCAGCGCACAGGCCTTTGGAGATCAACCCTTTCAGTCCCGGGTCAGGAAC
TGTGGAAGGGCTGGCTGTTTTCCTTCTTCCTGTGCTGTGAATTTTGAGGT
AAAGTAGGAAGACTCCTGGGTCAAGTGAGAATTGTACCAGGGGTGGTAAT
CTTGCCTTGACATTTCTCAAGCCACAGCCACCCAGGGACTGATAAATCTA
TTTTTTTTCCCCCCCCCCCATGAAATGCTCACCAAGGTGAAAAAAAGAGA
TTCTGGAACCCAGAGCTCTAGTTGGAGGCCAGCCTGGGCTACACAGTGAG
ATCCTATCTCAAAACCTGAACAGACAAACACAGAACCAAACAAAGTATTA
CTGGTCACAACTCTGCCCAGCGTGCCCACCCTGGCAGAGCTTAGAACCCT
GAGCGACAGAGAGCACAGGGCCCCTAACCCAGTGCCTGGGCGCCTTGCCT
CCAACCGAGTTCTGTTGGTCCCTGCTTCATCTGGTTTCATGTGTTTTCCT
AGCCTCACCTCCCTTGGTTTCCATGGTGACCCTCTGAGTTTGGCAGTGAC
AGTCAAGCCCCCTTCCAAAGGAGGATGGACAGGTGGACAGGAGAATTCTT
CACAGAGATCAGCAACAAAGTTGCTGGCTCTGTCTTTTCAATCCTTAACA
AATCCCAGTCCCCAGGGTGTGGGCCTGTCATCCCCAGGGGATTTTTCCTA
CAGGCTCTTTTGAGGTTTAGAAAAAAATTCTGGGTCCCCCAAAAAAAAAA
ACGGGGGTTGGTGTTTGTTGTTAAAACTATTTTCTTCATTCATCTTCCTT
TTCTTTACCTTTCCTACTGTATTCTCTTTCATTTTTTTTGTTGTTACTTT
CTATTCATTTATTTATTTATTTTCTTATCATCTTTCTTTTTCTTATCATT
TTCGCTTTATCTCATTTGTCATTTTTCCTTTCTTCTTTTCTTCTACTCTT
TCCTCTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_e05.b1 MSMg01no161_e05.b1 CHROMAT_FILE:
MSMg01no161_e05.b1 PHD_FILE: MSMg01no161_e05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:40 2005
         (419 letters)



>mm_chr5_112047558_112048377
          Length = 820

 Score =  777 bits (402), Expect = 0.0
 Identities = 405/406 (99%), Gaps = 1/406 (0%)
 Strand = Plus / Minus

                                                                       
Query: 15  gaatt-caaccctataaacaaaaaccccatgatgaaacagactctaataaggtcctgcgt 73
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gaattccaaccctataaacaaaaaccccatgatgaaacagactctaataaggtcctgcgt 561

                                                                       
Query: 74  tgtgcctaccaaatgaccacaaggaaacagctcaaccaccaggcctgtcgttagcagtgg 133
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgtgcctaccaaatgaccacaaggaaacagctcaaccaccaggcctgtcgttagcagtgg 501

                                                                       
Query: 134 gcagaacaatgggttctctcaaacccatgtggctgaggtgccacatgggcctcgctcact 193
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gcagaacaatgggttctctcaaacccatgtggctgaggtgccacatgggcctcgctcact 441

                                                                       
Query: 194 gagcgtggtctagaaagtccatccacctgtggaccatggtgctttgctgggaacagggtg 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gagcgtggtctagaaagtccatccacctgtggaccatggtgctttgctgggaacagggtg 381

                                                                       
Query: 254 cagggacatggggtccatgactaacacccccacccacccacacacacacacttgtctgaa 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cagggacatggggtccatgactaacacccccacccacccacacacacacacttgtctgaa 321

                                                                       
Query: 314 acagtggaagtcacacatgctgtaagaatcatgtccagggtgctggctgcagcagccctg 373
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 acagtggaagtcacacatgctgtaagaatcatgtccagggtgctggctgcagcagccctg 261

                                                         
Query: 374 atcctgtggaaccctgtgggtggaatgagctgggtctgtaggtcag 419
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 atcctgtggaaccctgtgggtggaatgagctgggtctgtaggtcag 215


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 820
Length adjustment: 9
Effective length of query: 410
Effective length of database: 811
Effective search space:   332510
Effective search space used:   332510
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no161_e05.g1 MSMg01no161_e05.g1 CHROMAT_FILE:
MSMg01no161_e05.g1 PHD_FILE: MSMg01no161_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:40 2005
         (329 letters)



>mm_chr5_111905314_111906042
          Length = 729

 Score =  621 bits (321), Expect = 0.0
 Identities = 327/329 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggactcctgtggacacccaaatctgaaggaggtcttcatgcttcttatgtagagcgcgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 aggactcctgtggacacccaaatctgaaggaggtcttcatgcttcttatgtagagcgtgt 260

                                                                       
Query: 61  gtgtgggcctgagagcaatgcgcagtctcccaatatttcaaccggctctagatgactacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgtgggcctgagagcaatgcgcagtctcccaatatttcaaccggctctagatgactacc 320

                                                                       
Query: 121 cacacctagcatccaggaaatgtgttgcaggatcagggagtaaaagaaaaccagtctata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacacctagcatccaggaaatgtgttgcaggatcagggagtaaaagaaaaccagtctata 380

                                                                       
Query: 181 cctcagcgcacaggcctttggagatcaaccctttcagtcccgggtcaggaactgtggaag 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 cctcagcgcacaggcctttggagatcaaccctttcagtcccgggtcaggaactgtggagg 440

                                                                       
Query: 241 ggctggctgttttccttcttcctgtgctgtgaattttgaggtaaagtaggaagactcctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggctggctgttttccttcttcctgtgctgtgaattttgaggtaaagtaggaagactcctg 500

                                        
Query: 301 ggtcaagtgagaattgtaccaggggtggt 329
           |||||||||||||||||||||||||||||
Sbjct: 501 ggtcaagtgagaattgtaccaggggtggt 529


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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