Query= MSMg01no163_k17.b1 MSMg01no163_k17.b1 CHROMAT_FILE:
MSMg01no163_k17.b1 PHD_FILE: MSMg01no163_k17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:18 2005
(300 letters)
>mm_chr5_51857045_51857744
Length = 700
Score = 565 bits (292), Expect = e-165
Identities = 298/300 (99%)
Strand = Plus / Plus
Query: 1 atacatcatgcctctgaccatcaagcctaccaactggctcaatgaagtaaagcaagcaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atacatcatgcctctgaccatcaagcctaccaactggctcaatgaagtaaagcaagcaga 260
Query: 61 cacatgattcatttccatgtcaactgtatgtcacagctgaaggctaaaagtgtatgtcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacatgattcatttccatgtcaactgtatgtcacagctgaaggctaaaagtgtatgtcca 320
Query: 121 gaacatccaacacagttgaatggtccgtagttagaaatggctgacgaggtttaagcctaa 180
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 321 gaacatccaacacagttgaatggtccgttgttagaaatggctgatgaggtttaagcctaa 380
Query: 181 gcagtgccttacatgcataatcaagggaatcataacacgacattccgttctatttactca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagtgccttacatgcataatcaagggaatcataacacgacattccgttctatttactca 440
Query: 241 tccagtttcagtccaacagccaaatgtgacgggactgttatctaaacttaaacttcctgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccagtttcagtccaacagccaaatgtgacgggactgttatctaaacttaaacttcctgg 500
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space: 201081
Effective search space used: 201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no163_k17.g1 MSMg01no163_k17.g1 CHROMAT_FILE:
MSMg01no163_k17.g1 PHD_FILE: MSMg01no163_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:19 2005
(284 letters)
>mm_chr5_51961070_51961757
Length = 688
Score = 522 bits (270), Expect = e-153
Identities = 282/288 (97%), Gaps = 4/288 (1%)
Strand = Plus / Minus
Query: 1 acagagagactccttgagtgctgggattaaaagtgttcatgacagtctatattctgtctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 acagagagactccttgagtgctgggattaaaagtgttcatgacagtctatattctgtctt 429
Query: 61 tttcctctctc----tccttttcttttaaatcaaatattttctaaggggagattaggaat 116
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tttcctctctctctttccttttcttttaaatcaaatattttctaaggggagattaggaat 369
Query: 117 catatatcttagcttcctgtctttgaaagaccaatacgaaggattttgagaggcaccaaa 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 catatatcttagcttcctgtctttgaaagaccaatacgaaggattttgagaggcaccaaa 309
Query: 177 attttgtgaaatttccatatctgattgcatttccaaacagagatgaaatatctattggaa 236
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 308 attttgtgaaattcccatatctgattgcatttccagacagagatgaaatatctattggaa 249
Query: 237 attgattctgttatagatggtgaaaggtaacagggacatctgcttgtt 284
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 attgattctgttatagatggtgaaaggtaacagggacatctgcttgtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 688
Length adjustment: 9
Effective length of query: 275
Effective length of database: 679
Effective search space: 186725
Effective search space used: 186725
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
