BAC Information

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BAC

Clone NameMSMg01-163N05
Chromosome5 (Build37)
Map Location 82,141,910 - 82,142,193
singlet/doubletsinglet
Overlap geneLphn3
Upstream geneLOC100039506, LOC100039384
Downstream geneEG433912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163N05.T7 (MSMg01no163_n05.b1)MSMg01-163N05.TJ (MSMg01no163_n05.g1)
ACCAG362509AG362510
length749749
length of high quality
(start - end)
313 (45 - 357)285 (75 - 359)
definitionCHROMAT_FILE: MSMg01no163_n05.b1 PHD_FILE: MSMg01no163_n05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:30 2005CHROMAT_FILE: MSMg01no163_n05.g1 PHD_FILE: MSMg01no163_n05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTTAGCTCTGAGCTCCATTTTTTAATGGGGTTATTTGATTTT
ATGGAGTCCACATTCTTGAGTTTTTTATATATATTGGATGTTAGTCCCCT
ATCTGATTTTGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTT
TTGTCTTATTGACAGTGTCTTTTGCTGTACAGAAGCTTTGCAGTTTTATG
AGGTTCCATTTGCCAATTCTTGATCTTACAGCACAAGCCATTACTGTTCT
ATTCAGGAATTTTCCCCCTGTGCCCATATCTATCAGGCTTTTCCCCACTT
TCACCTCTATTAATTTCACCCGCCTCTGGTTTTATGTGTGGTTGCTTGAT
CCACTTAAATTTGACCATAGTACAAGGAGATAGGAATGGATCAATTCACA
TTCTTCTACATGATAACCAGCAGTTGTGCCAGCACCATTTGTTGAAAATG
CTTTTTTTCCACTGAATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGACC
ATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTCATCTA
CTTGTCTTTAGATATACCACTACCATGCAGTTTTTATCACAATTGCTCTG
TAGTACAGCTTTAGTTCAGGCATGGTGATTCCACCAGAGGTTATTTTATC
CTTGAGAAGAGTTTTTGCTACCCTAGGATTTTTGTTTTTCCAGATGAAT
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAACACGATAGAATACCAAAGTACAGT
AGGCAGGAGTGTGTCCGGAGTATTCCCTATTAATATTATTATGACTAATC
GCTTAATTAAATTTATGGTGTATGAGACTGTTGAAATCGTACAAGTATAT
GAGAATTTTGAACTTTTTTGTAGTTAAGTGGAATACATGGAAATATATTT
TAAAACATTGTCACTTCCTTCTAAGATGAAGTTTGTTTTTATGGGGTGTA
TACTTTTTTATTTGTCCTACAGATACTTGATTTAAATCATTGTGACAAAA
GACAACAATTTTTTTCAAACCTTTTTGCACCCTGTCTCTTAGATGGATAA
GTAATCAGCAGAGTCAGCATTTGTAAAACACTTTTTAAAGTGGCCATTGG
AGCTGCTGCATGGATGTAGGCGGGAGGCTTAGCCAGTTGGTGATGATGCC
TTAGAGAAAAATGACATGATTTCTAAGGACATTTGTTTAAACAAACTGAG
ACAGATGAAGTTTTGGTAATATGAAATAAAACTGTACTATTTTAGGAGTG
TATTTTCTATTTTCTAATGTATATATAAATTAATAACCCACTTGACTTGA
TTTCCAGCCCTAGGTTATAGAAATATTTTTAATTAAAAATGGCTGGGCTC
TCTCTCTCTCTCTCTCTTTTTTTTTTCACAGAGAGCATGAGTTTAGGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_n05.g1 MSMg01no163_n05.g1 CHROMAT_FILE:
MSMg01no163_n05.g1 PHD_FILE: MSMg01no163_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:30 2005
         (285 letters)



>mm_chr5_82141710_82142394
          Length = 685

 Score =  534 bits (276), Expect = e-156
 Identities = 282/284 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacacgatagaataccaaagtacagtaggcaggagtgtgtccggagtattccctattaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacacgatagaataccaaagtacagtaggcaggagtgtgtccggagtattccctattaat 260

                                                                       
Query: 61  attattatgactaatcgcttaattaaatttatggtgtatgagactgttgaaatcgtacaa 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 atgattatgactaatcgcttaattaaatttatggtgtatgagactgttgaaattgtacaa 320

                                                                       
Query: 121 gtatatgagaattttgaacttttttgtagttaagtggaatacatggaaatatattttaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtatatgagaattttgaacttttttgtagttaagtggaatacatggaaatatattttaaa 380

                                                                       
Query: 181 acattgtcacttccttctaagatgaagtttgtttttatggggtgtatacttttttatttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acattgtcacttccttctaagatgaagtttgtttttatggggtgtatacttttttatttg 440

                                                       
Query: 241 tcctacagatacttgatttaaatcattgtgacaaaagacaacaa 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcctacagatacttgatttaaatcattgtgacaaaagacaacaa 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)