Query= MSMg01no163_o14.b1 MSMg01no163_o14.b1 CHROMAT_FILE:
MSMg01no163_o14.b1 PHD_FILE: MSMg01no163_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:37 2005
(308 letters)
>mm_chr5_78578819_78579524
Length = 706
Score = 547 bits (283), Expect = e-160
Identities = 299/305 (98%), Gaps = 2/305 (0%)
Strand = Plus / Plus
Query: 4 ggaattctttgagttggaggccatcatggtctatgtagtgagtttcaggccagtcagaac 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttgagttggaggccatcatggtctatgtagtgagtttcaggccagtcagaac 263
Query: 64 tatatgttgagacactacctcaaaatgaaaataagtgtatgacaatgcaaaatgatagga 123
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 264 tatatgttgagacactacctcaaaatgaaaat--gtgtatgacaatgcaaaatgatagga 321
Query: 124 atggtgcttctcttttgtttatgagatttcactacagttaacagaatttgttgaagcccc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 atggtgcttctcttttgtttatgagatttcactacagttaacagaatttgttgaagcccc 381
Query: 184 tgaataggagttttccacatgagacttgtcttcccaagagagtaatcatgaatactgtat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tgaataggagttttccacatgagacttgtcttcccaagagagtaatcatgaatactgtat 441
Query: 244 gctcactgaatggagtagagccataatggtgttgaggaatggtcagtgagtcagagagga 303
||||| ||| ||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 442 gctcagtgagtggagtagagccataatgggggtgaggaatggtcagtgagtcagagagga 501
Query: 304 gtgga 308
|||||
Sbjct: 502 gtgga 506
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 706
Length adjustment: 9
Effective length of query: 299
Effective length of database: 697
Effective search space: 208403
Effective search space used: 208403
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no163_o14.g1 MSMg01no163_o14.g1 CHROMAT_FILE:
MSMg01no163_o14.g1 PHD_FILE: MSMg01no163_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:37 2005
(279 letters)
>mm_chr5_78725406_78726081
Length = 676
Score = 435 bits (225), Expect = e-126
Identities = 263/277 (94%), Gaps = 3/277 (1%)
Strand = Plus / Minus
Query: 1 tcttgactagtgagacttcaggtcaaataggctgtctcccctaggggtcttgtggagtgt 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 474 tcttgactagtgagacttcaggtgaaataggctgtctcccctaggggtcttgtggagtgt 415
Query: 61 gtgctctctatggttttgggtgactctggggtccctagtgccattgttgctggggttcta 120
|||||||| ||||||| ||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 414 gtgctctccatggtttggggcgactctggggtccctagtgccaatgttgctggggttcta 355
Query: 121 accttcaggaaagaaatcagatctgtgggataagaaatgaggtgcagggccaggatatag 180
|||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||
Sbjct: 354 accttcaggaaagaaatcagatttgtgggctaacaaatgaggtgcagggccaggatatag 295
Query: 181 tttaccactgctgggtgtgctttaagggcacatggctggtaaagactttgtggggggggt 240
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 294 tttaccactgctgggtgtgctttaaggggacatggctggtaaagactttgtggggg---t 238
Query: 241 gattttacctggttgtccctattgctgaacacaacac 277
||| ||||||||||||||||||||||||| |||||||
Sbjct: 237 gatcttacctggttgtccctattgctgaagacaacac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 676
Length adjustment: 9
Effective length of query: 270
Effective length of database: 667
Effective search space: 180090
Effective search space used: 180090
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
