Query= MSMg01no164_f06.b1 MSMg01no164_f06.b1 CHROMAT_FILE:
MSMg01no164_f06.b1 PHD_FILE: MSMg01no164_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:09 2005
(314 letters)
>mm_chr5_134910421_134911134
Length = 714
Score = 497 bits (257), Expect = e-145
Identities = 296/309 (95%)
Strand = Plus / Minus
Query: 5 gaattctcttccttcttccacctctgtcctggggattgttcccacgccatcgggctttgg 64
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 513 gaattctcttccttcttccacctcggtcctggggattgttcccacgccatcgggctttgg 454
Query: 65 aggcaagggccatctccggggatcctattttgttttgttttgaaggaatgaagcttctgt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 aggcaagggccatctccggggatcctattttgttttgttttgaaggaatgaagcttctgt 394
Query: 125 ttctgtttcccaaggtagttaagtgcctgcagcagggtgccttaggtcatttatgaaaca 184
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ttctgcttcccaaggtagttaagtgcctgcagcagggtgccttaggtcatttatgaaaca 334
Query: 185 gaaaacagtaaaaagaaaaggtcttgggtgatgttgcaggcctgcgattcatgtaggggg 244
|||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||
Sbjct: 333 gaaaacagtaaaaagaaaaggtctggggtgatgttgcaggcctgtgattcacgtaggggg 274
Query: 245 ggggcagcctttgctacttggcaagtgaaatatctcctttggctccaaggaactcaactg 304
|||||||||||||||||||||||||||| | | | ||| |||||||| |||||||| |||
Sbjct: 273 ggggcagcctttgctacttggcaagtgagagaccacctctggctccagggaactcagctg 214
Query: 305 ggagtccaa 313
|||| ||||
Sbjct: 213 ggagcccaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space: 215025
Effective search space used: 215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no164_f06.g1 MSMg01no164_f06.g1 CHROMAT_FILE:
MSMg01no164_f06.g1 PHD_FILE: MSMg01no164_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:09 2005
(343 letters)
>mm_chr5_134765814_134766556
Length = 743
Score = 601 bits (311), Expect = e-176
Identities = 336/345 (97%), Gaps = 3/345 (0%)
Strand = Plus / Plus
Query: 1 ccattccaaagaattcactgccctcttctgacctctgtgagtagtgcacacatgtggtcc 60
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 200 ccattccaaagaattcactgccctcttctgacctctgtgggcagtgcacacatgtggtcc 259
Query: 61 atagacacatgggcgagacacaaaaactcacatacataaaataaaaataaatcttaaaaa 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 atagacacatggg-gagacacaaaaactcacatacataaaataaaaataaatcttaaaaa 318
Query: 121 aaaaaa--ggcggtttggcggtcatccaggggtgccacaggagactgtagctcaagacac 178
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aaaaaaaaggcggtttggcggtcatccaggggtgccacaggagactgtagctcaagacac 378
Query: 179 cagggctaggcacggagctcagctgtgcttgccaatcatgcacggagctcggggttcaac 238
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cagggctaggcatgaagctcagctgtgcttgccaatcatgcacggagctcggggttcaac 438
Query: 239 ctccgggggaccgagaactcaaggtcctcctttgctgcaaagcaagtctgaggtcacatg 298
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ctccgggggactgagaactcagggtcctcctttgctgcaaagcaagtctgaggtcacatg 498
Query: 299 agaccctgtctgcataaataaatgaactaacatataaccagggtt 343
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 agaccctgtctgcataaataaatgaactaacatataaccagggtt 543
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space: 245156
Effective search space used: 245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
