BAC Information

Click to search

BAC

Clone NameMSMg01-164F07
Chromosome5 (Build37)
Map Location 31,206,672 - 31,206,874
singlet/doubletsinglet
Overlap gene9430057O19Rik
Upstream geneLOC100039369, Il6, Tyms, EG242914, Gm444, Hadha, Hadhb, Gpr113, EG384325, D5Wsu178e, Gm1060, Otof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik
Downstream gene2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164F07.T7 (MSMg01no164_f07.b1)MSMg01-164F07.TJ (MSMg01no164_f07.g1)
ACCAG362842AG362843
length721781
length of high quality
(start - end)
315 (50 - 364)193 (79 - 271)
definitionCHROMAT_FILE: MSMg01no164_f07.b1 PHD_FILE: MSMg01no164_f07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:09 2005CHROMAT_FILE: MSMg01no164_f07.g1 PHD_FILE: MSMg01no164_f07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCTAACCATTCCTTTCTCAAGTCACTACAGGCCCTCCTGTT
CCTCATACAGGTTTCATTGGACTATCTGAGAGACCAGCTGTAGGCATACA
TTTTTTTGCAATCTACTTTAGTAAATGTTCAACCTCTTCTGTAGTCTGTG
ACCCAGCAGAGGTAGTGGAAGAGAAACGTTATTAGGAGATGGGGGAAGTG
TTTAGCAATCGTTCTTTGGGGGAGAGCTCAATCTTCTTTGTGCGCAGTTC
AGTCCCACAGCAAACACCAGATACAAACCAGCAGCTACAGTCCAGTCCTT
TCTGCAGGCAGACTTTTTTTTCTAACCCGCCCCTGCCGTTCAATCCTGAA
GAAACCACAAGGCTTGCCTTCCACACCAAGGCCCCAAAAGCAGCAAGAAA
CTGCAGGAACCTCAAGAGCAGTTCTTGGGTGAGTTTCTCTCAATGTGGGT
GTTACCACAAGCTGAACTCAACATAGAATATGTAAGGCTAACCACTATGA
TATCATTAGCAAAGAATAGGGAGGCAGAGCAAACCTAACCAATGCTGCCT
GCGGGGTCATATTTATACTCCTTCATCACAGGTCCTTTCATATGTATGCT
ATAGCACAATATCCTTTCACCTGTGTCTGTTTTAGGAAAATATTCTTCCC
TGTGTTTGTTTTACCATCACT
CCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTACACAG
AGAAACCCTGTCTTGAAAAAACAAAACAACAACAAAAAGACCTTCTCACA
TATGACAACATCTAGAGAGGACTCGGTTGTTGCCACGGGAAGGACCTAGG
GGTAAGGAGCAAACAGTAGTTTAAGGAAGGATGGCACTAAACACCCTGCA
TGTACTAAATCACCAAAGATAAATGATTGGTTTTCAATGATGCTGAAGAT
CAAGGCCTACTGATAANCCTCAAAGTTTGANCACGGGCTCCAGCTTACCA
TGAAATACAGTTTTTTATCTTTTCCCCCCCCCCGCCAAAAAAAAAAGCCC
AAAAACCTGTTTCCGGGGAGTCCCCCCCCCAAAAAAAAAACCAACCCTGT
NNGATCTGCCCCCCCTGGTCTCCTAAGGAAAACGGGGCCCTTCCCCTCCT
TCTTGGAAACACCCAAAAACGCCTTTGGGGGTTGGGAAAAGCCTCGGTNN
TGGGCGGGGGGGGGGGTCTTATATTTATAACTTCTATCTANGATNACNCT
TTCTTCCTTTTCTTTACGTTCTGTGCGTTATTACTCAAAACCCCATTACA
CCACTTTTTAGAACGCGGTTGGGGGGGGGTTCTCTCTCTTCTTTTTTCTT
CTCGTGCCCTTGTGTGTTGTTGTGGGTTCGCTTCAATAGAAAAAAACCTT
TTTTNTTNNCTTCCTTTTTTGCCGTTTTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_f07.g1 MSMg01no164_f07.g1 CHROMAT_FILE:
MSMg01no164_f07.g1 PHD_FILE: MSMg01no164_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:09 2005
         (193 letters)



>mm_chr5_31206482_31207074
          Length = 593

 Score =  342 bits (177), Expect = 6e-99
 Identities = 192/203 (94%), Gaps = 10/203 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacagccagggctacacagagaaaccctgtcttgaaaaaac----------aaaaca 50
           ||||||||||||||||||||||||||||||||||||||||||||          ||||||
Sbjct: 191 caggacagccagggctacacagagaaaccctgtcttgaaaaaacgaaacaaaacaaaaca 250

                                                                       
Query: 51  acaacaaaaagaccttctcacatatgacaacatctagagaggactcggttgttgccacgg 110
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 acaacaaaaagaccttctcacatatgacaacatctagagaggactcggttgttgccacgg 310

                                                                       
Query: 111 gaaggacctaggggtaaggagcaaacagtagtttaaggaaggatggcactaaacaccctg 170
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 311 gaaggacctaggggtaaggagcacacagtagtttaaggaaggatggcactaaacaccctg 370

                                  
Query: 171 catgtactaaatcaccaaagata 193
           |||||||||||||||||||||||
Sbjct: 371 catgtactaaatcaccaaagata 393


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 593
Length adjustment: 8
Effective length of query: 185
Effective length of database: 585
Effective search space:   108225
Effective search space used:   108225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)