BAC Information

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BAC

Clone NameMSMg01-164L18
Chromosome5 (Build37)
Map Location 85,423,420 - 85,423,736
singlet/doubletsinglet
Overlap genenone
Upstream geneEpha5, LOC100039489
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164L18.T7 (MSMg01no164_l18.b1)MSMg01-164L18.TJ (MSMg01no164_l18.g1)
ACCAG363113AG363114
length742738
length of high quality
(start - end)
320 (43 - 362)511 (72 - 582)
definitionCHROMAT_FILE: MSMg01no164_l18.b1 PHD_FILE: MSMg01no164_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:40 2005CHROMAT_FILE: MSMg01no164_l18.g1 PHD_FILE: MSMg01no164_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATTTTCCAAGGATTATGAATGGTTCTTTACTTTTCTTTCCATTTTTCT
CTGTACTGTTATAAAATCAGTAGGAATTCATTACCATTTTACGGCTATTA
TAGCAGAGAAATTTAGGCTCACTATTATTTTTGAGGGAAAGTTGATACTG
TATAATGGCCAAAATATAGCTTTTTTTTCATTTATTTTATGCAAGAATTT
TTCCTTATAAGAACATATAACTACTTGAAGACATAGTTTAAATTTGTTTT
ATTTCCAGTTCAATGCTTAGCACTGATGCCTATATTTAATTTGGTTGCTT
CCTCTCCTCTTATTGACTTTCCCCCCTCGCCCTGCATCAAATAATTTGTG
TGGGGGTTGTAGTGCCCCAACATGGGTTTTTATGTGTATTATGCGGAGCT
AGGACCATGTAGAACTTGTGCGTCTTACCTGCTCTCTTCATTGCACAATG
ATGAGACCGGCTAACACATTGAACCACACCTTAGTGCCTAGGCTGACCAG
TTGGCATCAATGCCCACGGGTTCTGCCGTCTACCGCCCCCCTCCTGGGCT
GAGGTTACTGACCAGACTCCAGATCCCATAGACCCAACCTTAGGGCCTCA
CGTTCACCATTTACCCATTTTTCTCCTTGAGCCCCCTACTTAGTCTTATT
TAAACCCTTTTTATGCCCTTACCAATATGCCTGCGCCCCGTT
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTTCAGTTTGTGTTTTCTTTTTTGTTTCT
ATTGCCACTTTCAGGCATTGAGCACTTTTATTTATTTCTGTCTACTGTTT
GTTTGTGTTTGGCCTTCTTACAGGGATTATTCATTTCCTTCATTTTTTTT
TTTTTGGCTTGGCTTGGCTTTGGCTCAATTTCTATTAAGGGATTTATTCA
TTTCATTCTTAAGGACCGCTATCAATTTCTTCATCCAGCCTTGAGATGAG
GATTTATGGCTATTCTGACTATTTTGTTATGCCATATTTAGTTGATATCA
CTGGGAGGGCTACTATTCTCTGAAGGGAAACAGAGGAGTGATGAATCCTG
AGTAGAAGGGAAGCCCCACCCAACTGGGAGGAGGAAAAGGAGGGTAGGTT
GCAGTCAGAATCTGATGTAGGAGAGAAAAAAATAAAAATATATATGTATA
ATAATCATACATATATAATTTGTAGTTCAAGATATGGATATTCACCTTTA
TTTCTGTGAAATAATATAAATATAATGTGCGTATGTATACACACACACAC
ACTTTCACTCTTTCACATACCTCTATATATACATATATATATATATATAT
GAATATCCTTCATTTAAAGTTAACATGCCTCTGCNCAGTATTTACATAGT
ATATTTCTTCATTATGGCATAAAATCATCTTACTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_l18.b1 MSMg01no164_l18.b1 CHROMAT_FILE:
MSMg01no164_l18.b1 PHD_FILE: MSMg01no164_l18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:40 2005
         (320 letters)



>mm_chr5_85423216_85423936
          Length = 721

 Score =  598 bits (309), Expect = e-175
 Identities = 315/317 (99%), Gaps = 1/317 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattttccaaggattatgaatggttctttacttttctttccatttttctctgtac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattttccaaggattatgaatggttctttacttttctttccatttttctctgtac 264

                                                                       
Query: 65  tgttataaaatcagtaggaattcattaccattttacggctattatagcagagaaatttag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgttataaaatcagtaggaattcattaccattttacggctattatagcagagaaatttag 324

                                                                       
Query: 125 gctcactattatttttgagggaaagttgatactgtataatggccaaaatatagctttttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gctcactattatttttgagggaaagttgatactgtataatggccaaaatatagctttttt 384

                                                                       
Query: 185 tt-catttattttatgcaagaatttttccttataagaacatataactacttgaagacata 243
           || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttcatttattttatgaaagaatttttccttataagaacatataactacttgaagacata 444

                                                                       
Query: 244 gtttaaatttgttttatttccagttcaatgcttagcactgatgcctatatttaatttggt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtttaaatttgttttatttccagttcaatgcttagcactgatgcctatatttaatttggt 504

                            
Query: 304 tgcttcctctcctctta 320
           |||||||||||||||||
Sbjct: 505 tgcttcctctcctctta 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 721
Length adjustment: 9
Effective length of query: 311
Effective length of database: 712
Effective search space:   221432
Effective search space used:   221432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)