Query= MSMg01no165_c09.b1 MSMg01no165_c09.b1 CHROMAT_FILE:
MSMg01no165_c09.b1 PHD_FILE: MSMg01no165_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:12 2005
(694 letters)
>mm_chr5_26822918_26824012
Length = 1095
Score = 574 bits (297), Expect = e-168
Identities = 306/309 (99%), Gaps = 1/309 (0%)
Strand = Plus / Plus
Query: 5 ggaattcctagttctcc-caaaacaatggaaatgagcactctcttccctagagcttgtct 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattcctagttctccacaaaacaatggaaatgagcactctcttccctagagcttgtct 264
Query: 64 aggaaaaacttgaatctcatatagatcatgattgagtcagaaccattaaccccagctccc 123
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 265 aggaaaaacttgaatctcataaagatcatgtttgagtcagaaccattaaccccagctccc 324
Query: 124 tgctggggaaaaagtgctcattggccctgaagaacacaaaatgccagatgaaatcagtct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgctggggaaaaagtgctcattggccctgaagaacacaaaatgccagatgaaatcagtct 384
Query: 184 gtgtgagcccttaggcaaaacttggctgcagtcttttcagggtcaagcatccagctttgg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtgtgagcccttaggcaaaacttggctgcagtcttttcagggtcaagcatccagctttgg 444
Query: 244 tagtatctatactccatgttgtgttggagagacccaggatctaccctggccttgtagatg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tagtatctatactccatgttgtgttggagagacccaggatctaccctggccttgtagatg 504
Query: 304 aaaattaga 312
|||||||||
Sbjct: 505 aaaattaga 513
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1095
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1085
Effective search space: 742140
Effective search space used: 742140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no165_c09.g1 MSMg01no165_c09.g1 CHROMAT_FILE:
MSMg01no165_c09.g1 PHD_FILE: MSMg01no165_c09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:12 2005
(664 letters)
>mm_chr5_26977924_26978984
Length = 1061
Score = 739 bits (382), Expect = 0.0
Identities = 457/490 (93%), Gaps = 19/490 (3%)
Strand = Plus / Minus
Query: 1 cttgtaatgtatgctaaggat-agttagataggtagacagacagacagacagacagacag 59
||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 473 cttgtaatgtatgctaaggataag-tagataggtagacagacagacagacagaca----- 420
Query: 60 acaggcaggcagtcagaccgacagatagatgtgtgtatacacatttcatgtaaggagccc 119
| | |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 --a---a--tagtcagactgacagatagatgtgtgtatacacatttcatgtaaggagccc 367
Query: 120 ataaattcttgtttatgcatgcacatggaaaacagaggccagcttctgctgtcatggcac 179
|||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 366 ataaattcttgttt----atgcacatggaaaacagaggccagcttctgctgccatggcac 311
Query: 180 tgtccatc-tttttttttccaattttttattaggtatttactttattaacatttcaaatg 238
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 310 tgtccatcttttttttttccaattttttattaggtatttacttcattaacatttcaaatg 251
Query: 239 ctatcccgaaattcccctataccctcccccccagccctgctcccctaccacccacttcca 298
|||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 250 ctatcctgaaattcccctataccctccccccgacccctgctcccctaccacccacttcca 191
Query: 299 ctttttggccctggcgtttcatctgtactgggacttataaagtttgcaagaccaaggggc 358
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 190 ctttttggccctggcgtttcatctgtactggggcatataaagtttgcaagaccaaggggc 131
Query: 359 ctctcttcccaatgatgaccgactagaccatcttctcgtacaaaagaagctagagacatg 418
||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 130 ctctcttcccaatgatggccgactagaccatcttctggtacaaaagaagctagaggcatg 71
Query: 419 agctctgggtgtactggttagttcatattgttgttccacctatagggttgcagacccttt 478
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 agctctgggggtactggttagttcatattgttgttccacctatagggttgcagacccttt 11
Query: 479 cagccccttg 488
|||| |||||
Sbjct: 10 cagctccttg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1061
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1051
Effective search space: 687354
Effective search space used: 687354
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
