BAC Information

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BAC

Clone NameMSMg01-165C19
Chromosome5 (Build37)
Map Location 133,505,785 - 133,506,359
singlet/doubletsinglet
Overlap genenone
Upstream geneAuts2
Downstream geneLOC100039731, LOC666038, LOC100039750
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-165C19.T7 (MSMg01no165_c19.b1)MSMg01-165C19.TJ (MSMg01no165_c19.g1)
ACCAG363414
length753752
length of high quality
(start - end)
---604 (64 - 667)
definitionCHROMAT_FILE: MSMg01no165_c19.b1 PHD_FILE: MSMg01no165_c19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:14 2005CHROMAT_FILE: MSMg01no165_c19.g1 PHD_FILE: MSMg01no165_c19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCGCTAAACGACTCACTATAGTTCCAGAATCCGCGGXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXTTTCGNATTCAATACCCAGAACCTACTAAAATTAAAAAGTCCAAGTG
GTACTCACTTATAATTCCGATAGTGGGGAGATGGAGACTGGAGGATTTCT
AGGTCTCATCAGACAGACAGTTTACCTGCATAAGTAAGGCCCAAGCCAGT
GAGTCCTTACCTCAGAGTTTAAGAACCAGATGAATGGGACCTGTAGATTG
TCACCTGAGGTTGTCTTCTAGCCTCCACATGCACATAAGCACGTAGGTCT
GGCTATATTTCCCTCCCTGTATTACTCAATTCATAACTGCAAGGCTCTGC
CCAACTTCTCTGCTCCTCAGGTCTCACATTCCTGTTCTGGGGACAACCCC
CCTCCGTCCACCCCCCCAGGGCTATCAATAAGCTAAGTCACTTGGCACCA
ACAGAGCTCTCCCGTGTCTAGAAATCACCTGTATTTTCTGTGTGCATTCC
CTTGCTAACTAAAGAAAACAGATTCCATTGGGAAGCATGTTAAGTGGTGT
CCCTGCCGTCGGCAGATTAGAACAGAGTTATAACCTGTTCTAAGAGAAGT
CTAAAGAGAGGGACTATTCACTGAGCTTGGCACGAAGCCACCTGCTGAGT
TTCGGAACAAACCAACTTGCTATCACTTATAAATTACGGCTGCCATTGAA
AGCTGCTGGTTCAGGGGACCTGGCATAAATAGGTGCACTCTAGATTAATC
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no165_c19.g1 MSMg01no165_c19.g1 CHROMAT_FILE:
MSMg01no165_c19.g1 PHD_FILE: MSMg01no165_c19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:14 2005
         (604 letters)



>mm_chr5_133505356_133506359
          Length = 1004

 Score = 1042 bits (539), Expect = 0.0
 Identities = 566/575 (98%)
 Strand = Plus / Minus

                                                                        
Query: 30   tccaagtggtactcacttataattccgatagtggggagatggagactggaggatttctag 89
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1004 tccaagtggtactcacttataattccgatagtggggagatggagactggaggatttctag 945

                                                                        
Query: 90   gtctcatcagacagacagtttacctgcataagtaaggcccaagccagtgagtccttacct 149
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 944  gtctcatcagacagacagtttacctgcataagtaaggcccaagccagtgagtccttacct 885

                                                                        
Query: 150  cagagtttaagaaccagatgaatgggacctgtagattgtcacctgaggttgtcttctagc 209
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 884  cagagtttaagaaccagatgaatgggacctgcagattgtcacctgaggttgtcttctagc 825

                                                                        
Query: 210  ctccacatgcacataagcacgtaggtctggctatatttccctccctgtattactcaattc 269
            ||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||
Sbjct: 824  ctccacatgcacataagcacgtaggtctggctatatttccctccctggaaaactcaattc 765

                                                                        
Query: 270  ataactgcaaggctctgcccaacttctctgctcctcaggtctcacattcctgttctgggg 329
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764  ataactgcaaggctctgcccaacttctctgctcctcaggtctcacattcctgttctgggg 705

                                                                        
Query: 330  acaacccccctccgtccacccccccagggctatcaataagctaagtcacttggcaccaac 389
            ||||||||||||||||||  | | ||||||||||||||||||||||||||||||||||||
Sbjct: 704  acaacccccctccgtccatacacacagggctatcaataagctaagtcacttggcaccaac 645

                                                                        
Query: 390  agagctctcccgtgtctagaaatcacctgtattttctgtgtgcattcccttgctaactaa 449
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644  agagctctcccgtgtctagaaatcacctgtattttctgtgtgcattcccttgctaactaa 585

                                                                        
Query: 450  agaaaacagattccattgggaagcatgttaagtggtgtccctgccgtcggcagattagaa 509
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584  agaaaacagattccattgggaagcatgttaagtggtgtccctgccgtcggcagattagaa 525

                                                                        
Query: 510  cagagttataacctgttctaagagaagtctaaagagagggactattcactgagcttggca 569
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524  cagagttataacctgttctaagagaagtctaaagagagggactattcactgagcttggca 465

                                               
Query: 570  cgaagccacctgctgagtttcggaacaaaccaact 604
            ||||||||||||||||| |||||||||||||||||
Sbjct: 464  cgaagccacctgctgagcttcggaacaaaccaact 430


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space:   590436
Effective search space used:   590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)