BAC Information

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BAC

Clone NameMSMg01-165F02
Chromosome5 (Build37)
Map Location 31,206,672 - 31,207,308
singlet/doubletsinglet
Overlap gene9430057O19Rik
Upstream geneLOC100039369, Il6, Tyms, EG242914, Gm444, Hadha, Hadhb, Gpr113, EG384325, D5Wsu178e, Gm1060, Otof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik
Downstream gene2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-165F02.T7 (MSMg01no165_f02.b1)MSMg01-165F02.TJ (MSMg01no165_f02.g1)
ACCAG363513AG363514
length709708
length of high quality
(start - end)		666 (42 - 707)627 (73 - 699)
definitionCHROMAT_FILE: MSMg01no165_f02.b1 PHD_FILE: MSMg01no165_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:26 2005CHROMAT_FILE: MSMg01no165_f02.g1 PHD_FILE: MSMg01no165_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCGCGGAA
TTCTCTAACTATCCCTTTCTCAAGTCACTACAGGCCCTCCTGTTCCTCAT
ACAGGTTTCATTGGACTATCTGAGAGACCAGCTGTAGGCATACATTTTTT
TGCAATCTACTTTAGTAAATGTTCAACCTCTTCTGTAGTCTGTGACCCAG
CAGAGGTAGTGGAAGAGAAACGTTATTAGGAGATGGGGGAAGTGTTTAGC
AATCGTTCTTTGGGGGAGAGCTCAATCTTCTTTGTGCGCAGTTCAGTCCC
ACAGCAAACACCAGATACAAACCAGCAGCTACAGTCCAGTCCTTTCTGCA
GGCAGACACCACACACGAACCAGCAGCTGTAGTTCAATCCTGAAGAAACC
ACAAGGCTTGCCAACCAGACCAAGGCCCCAAAAGCAGCAAGAAACTGCAG
GAACCTCAAGAGCAGTTCTTGGGTGAGTTTCTCTCAATGTGGGTGTTACC
ACAAGCTGAACTCAACATAGAATATGTAAGGCTAACCACTATGATATCAT
TAGCAAAGAATAGGGAGGCAGAGCAAACCAAACCAATGCTGTCTGCGGGG
TCATATTTATACTCCTTCATCACAGGTCCTTTCATATGTATGCTATAGCA
AAATATCCTTTCACCTGTGTCTGCTTTAGGAAAATATTCTTCCCTGTGTC
TGTTTTATN

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTACACAGAGAAAC
CCTGTCTTGAAAAAACAAAACAACAACAAAAAGACCTTCTCACATATGAC
AACATCTAGAGAGGACTCGGTTGTTGCCACGGGAAGGACCTAGGGGTAAG
GAGCAAACAGTAGTTTAAGGAAGGATGGCACTAAACACCCTGCATGTACT
AAATCACCAAAGATAAATGATTGGTTTTCAATGATGCTGAGGATCAAGGG
CTACTGATAGAGCTCAGAGGTTGAGCACGGGCTCCAGCTTAGCATGAAAT
ACTAGGTTTAATCCCCAGCACCATAAAGGGAACACAACAAGGCCAAGAAA
CTGATACAAGGGAAGTTACCATCCCTCGTAGTCCTACCTTGATGATCAGT
CCCCTCTGTTCTCTAGGGAGCAGCTGCTCATTCTCGTCTTCAGGGGACAA
GCCAGAGGCTGTCATGGTGATTGGGAAAAGCCTACTAGGGGCTGGTGCTC
GGATCCCTTGCATTAGGACTCGATTGCAGGTAAAATTTTTGGGGTCTTTC
CGTGTTTTTAGCATTAGCAGAACCCATCAAGACACTCTTGTGAACACTGG
GGGTTGGGCTGGGGTAGGGGAATGCTCCTTCCTGATTTACAGCCTTTTAT
AACCAGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no165_f02.g1 MSMg01no165_f02.g1 CHROMAT_FILE:
MSMg01no165_f02.g1 PHD_FILE: MSMg01no165_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:26 2005
         (627 letters)



>mm_chr5_31206482_31207508
          Length = 1027

 Score = 1181 bits (611), Expect = 0.0
 Identities = 626/637 (98%), Gaps = 10/637 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacagccagggctacacagagaaaccctgtcttgaaaaaac----------aaaaca 50
           ||||||||||||||||||||||||||||||||||||||||||||          ||||||
Sbjct: 191 caggacagccagggctacacagagaaaccctgtcttgaaaaaacgaaacaaaacaaaaca 250

                                                                       
Query: 51  acaacaaaaagaccttctcacatatgacaacatctagagaggactcggttgttgccacgg 110
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 acaacaaaaagaccttctcacatatgacaacatctagagaggactcggttgttgccacgg 310

                                                                       
Query: 111 gaaggacctaggggtaaggagcaaacagtagtttaaggaaggatggcactaaacaccctg 170
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 311 gaaggacctaggggtaaggagcacacagtagtttaaggaaggatggcactaaacaccctg 370

                                                                       
Query: 171 catgtactaaatcaccaaagataaatgattggttttcaatgatgctgaggatcaagggct 230
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 catgtactaaatcaccaaagataaatgattggttttcaatgatgctgaggatcaagggct 430

                                                                       
Query: 231 actgatagagctcagaggttgagcacgggctccagcttagcatgaaatactaggtttaat 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 actgatagagctcagaggttgagcacgggctccagcttagcatgaaatactaggtttaat 490

                                                                       
Query: 291 ccccagcaccataaagggaacacaacaaggccaagaaactgatacaagggaagttaccat 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ccccagcaccataaagggaacacaacaaggccaagaaactgatacaagggaagttaccat 550

                                                                       
Query: 351 ccctcgtagtcctaccttgatgatcagtcccctctgttctctagggagcagctgctcatt 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ccctcgtagtcctaccttgatgatcagtcccctctgttctctagggagcagctgctcatt 610

                                                                       
Query: 411 ctcgtcttcaggggacaagccagaggctgtcatggtgattgggaaaagcctactaggggc 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ctcgtcttcaggggacaagccagaggctgtcatggtgattgggaaaagcctactaggggc 670

                                                                       
Query: 471 tggtgctcggatcccttgcattaggactcgattgcaggtaaaatttttggggtctttccg 530
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 tggtgctcggatcccttgcattaggactcgattgcaggtaaaatttttggggtctttccg 730

                                                                       
Query: 531 tgtttttagcattagcagaacccatcaagacactcttgtgaacactgggggttgggctgg 590
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 tgtttttagcattagcagaacccatcaagacactcttgtgaacactgggggttgggctgg 790

                                                
Query: 591 ggtaggggaatgctccttcctgatttacagcctttta 627
           |||||||||||||||||||||||||||||||||||||
Sbjct: 791 ggtaggggaatgctccttcctgatttacagcctttta 827


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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