BAC Information

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BAC

Clone NameMSMg01-165O22
Chromosome5 (Build37)
Map Location 60,288,672 - 60,288,869
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041396, LOC666499, EG625870, LOC100041425
Downstream geneLOC546866, Cbfa2t2-ps1, LOC100041498, LOC666597
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-165O22.T7 (MSMg01no165_o22.b1)MSMg01-165O22.TJ (MSMg01no165_o22.g1)
ACCAG363921AG363922
length7481,129
length of high quality
(start - end)		710 (37 - 746)198 (195 - 392)
definitionCHROMAT_FILE: MSMg01no165_o22.b1 PHD_FILE: MSMg01no165_o22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:17 2005CHROMAT_FILE: MSMg01no165_o22.g1 PHD_FILE: MSMg01no165_o22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTG
TTCAGTTCTCGAGCCCCATTTTTTAATGGGGTTATTCGATTTTCTGAAGT
CCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCTCCTATCTGAT
TTAGGATAGGTAAAGATCCTTTACCAATCTGTCGGTGGTCTTTTTGTCTT
ATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCC
ATTTGTCAATTCTAGATCTTATAGCACAAGCCATTGCTGTTCTGTTCAGG
AATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTC
TATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAG
TTTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCTTTTA
CATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTTT
CTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGG
TGTATGGGTTCATTTCTGGGTCTTCAATCCTATTCCATTGGACCATGTAG
AGACTGCCATATCCATGGATCCACCCCATAATCAGCATCCAAAAGCTGAC
ACCATTGCATACACTAGCAAGATTTTATCGAAAGGACCCAGATGTAGCTG
TCTCTACAGTTACATCTGTAGATGTTGACTCACTGAGACTATGCCGGN

NAAATAANNNNNAAAAGACGCGAGCCGGCGGCGXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAACCCAAACATGTTTAT
TGNTGGNTATTCCTTCAAGAAGTAAAATGAATTCAGTGTATAATTCCATT
TTTAAATGAATGGACCCTTTAATTCAAATATACCTAAACCCCCCAATTGT
ATTTAATTGTGAAGAAAAATAAAGTTTGAAATGTATATGGTTATAGTTAC
AATTGAAAAATATTAAATTAATTGAAGTATTAAGGAAAATAATGCCTTAT
ATAATTATGTGTAATATATGTATATTTTTTGCTTTTATAGTATTAACTTT
ACATTTTATTACTTTATATCTCATTATATTCCTGTTAATCATGCAAGTAG
CTGCATTACAAACATAATATTAACCCCCAGTTCTTTAGTATGTTTTTACA
TGTAAACAAACTACCACTTTATCCTATATTACTCTGTATCCAATATCTGT
GATTCTAAAGGAGAAACCTTGAAAAACTATGAATGAGCAACTTCGTATAG
TAACTCTTCTATTGGGCAACTACAGATATGTAGAGTGTCAGTAACAGTAC
ATTTTTTTTAGTTTCCTGTCACTAGAATCTATAGAAAAAATGTACATCAA
CTTATGTCAACCAGATTAACAAAATTTTCATAAACCTTTTTTAAATATTT
CAGATGAATATTGTGAATGATGTAGACTGAATAGTCATTTGACAGTCCAA
ATCTGTAGTAGACCAGAAAGTAGTAATATTAACCCCCTGCGACAAAATAA
AAACCGTAAAATAATCCATCACTTTCTCTCCTTTTCTGCCTTTCCAACTC
TCCCAAATACCCTACCTCAGAATTTCCCCCATGACCCCCACCCCCNCCTT
AAATTTAAAAAATGCCCCAAAGCCCCTCCTGGGTTTCCCCGGGGGTGGGC
TTCCCCGGAAAATGGGGTTTTCGGGAACCAACCCACCCCCCCGGCCCAAC
CCAAATTGCCCCCCCCCCCCCCCCCCCCCCAAAAAAAAAAATTTTTTCTC
CCCCTCCCCCCCCAAAAAATAAAAGGGCGCCCTCCCACCCCCCCTCTATC
TTGTGGGGACCCCGGCCCCCCCCTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no165_o22.g1 MSMg01no165_o22.g1 CHROMAT_FILE:
MSMg01no165_o22.g1 PHD_FILE: MSMg01no165_o22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:17 2005
         (198 letters)



>mm_chr5_60288472_60289069
          Length = 598

 Score =  368 bits (190), Expect = e-106
 Identities = 196/198 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattgtatttaattgtgaagaaaaataaagtttgaaatgtatatggttatagttacaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 aattgtatttaattgtgaagaaaaataaagtttgaaatgtatatggttatagttacaatt 339

                                                                       
Query: 61  gaaaaatattaaattaattgaagtattaaggaaaataatgccttatataattatgtgtaa 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 338 gaaaaatattaaattaattgaagtattaaggaaaataatgctttatataattatgtgtaa 279

                                                                       
Query: 121 tatatgtatattttttgcttttatagtattaactttacattttattactttatatctcat 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tatatgtttattttttgcttttatagtattaactttacattttattactttatatctcat 219

                             
Query: 181 tatattcctgttaatcat 198
           ||||||||||||||||||
Sbjct: 218 tatattcctgttaatcat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 598
Length adjustment: 8
Effective length of query: 190
Effective length of database: 590
Effective search space:   112100
Effective search space used:   112100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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