BAC Information

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BAC

Clone NameMSMg01-166C14
Chromosome5 (Build37)
Map Location 39,421,918 - 39,590,078
singlet/doubletdoublet
Overlap genenone
Upstream geneStx18, Nsg1, LOC100040397, Zfp509, Lyar, Tmem128, Otop1, Drd5, 4930487D11Rik, Slc2a9, Wdr1, 4930421P07Rik, 6820424L24Rik, Clnk
Downstream geneLOC384174, Hs3st1, EG665839
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166C14.T7 (MSMg01no166_c14.b1)MSMg01-166C14.TJ (MSMg01no166_c14.g1)
ACCAG364073AG364074
length751733
length of high quality
(start - end)		220 (47 - 266)649 (77 - 725)
definitionCHROMAT_FILE: MSMg01no166_c14.b1 PHD_FILE: MSMg01no166_c14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:34 2005CHROMAT_FILE: MSMg01no166_c14.g1 PHD_FILE: MSMg01no166_c14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,421,918 - 39,422,120)(39,589,653 - 39,590,078)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATTTCCTAGCCTATAAAATGTTCTGGCCTTAAAATAGCCTTCTG
CTCCTGTCCTCCTCTAGGAGGGCACAGCTGGTTAAGCTTTTCTACTTCTC
TTTGTGAAGGCAAGTTCCTTCTTGTCCACTCCTGAGTACCCTGCTATGCC
ACATCCTCTGGCCACCTTCTCTTTTTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTGNNNTTNNNTNTNNNTTTTTNNNTNTTTTTTTTTT
TTTTTTTTNTNTTTTTTTTTTTTNNTTTTTTTTNTTNTTNNNNNNNNAAT
TTTTTTTTTTTCCCNNNCCCCNNCCCCNNNNNNNNNTNNNNNNNNNNNNN
NNNNTTCCCCCCCAAAAAAAAAAAAAAAACCNGCGGGGGGGGGGGGGCGC
CCCCCCCCCCGCCCCCGCCCCGCGGCCCGCCGGGGGGGGCCCCCCCCGCC
CCACGCAAAAAAAACACACCCACGGGAAAAACCCCCACCGCACCAAAGAC
GACATAACCCCTCTTCCCGCTTTATTTACCATTTTTTTTTCTTCATCATC
CCACTCCCCTTTTTTTTACCCCCCCCCTCTCCTTTCTTTACTTCATTTCC
CTCCTTTTTTTCTCTCCCCCCGTTTTTTCTCCCCCCCTTCGGGTCATTAT
GTTAAACTCCAATATTTCTTCTTCACCACTATTATTTTTTTATCCACAAA
G

CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTCATTACTGTGAATGACCCTTG
TGCTGAACTTTACCCTGCATAGCAGACTGTCTGTGTGGCATTTCCACACA
GGAGCTAATAGACATTTCTAATGTAACAAGGCCCAAACCAAATCAAGATC
CTTTGCTGGGACAGTGTTTCTCCCCTTAGGCAGCTCCATCTCAGCAAGTG
ACAGCTTCATTCATTAAGTGGCTTGGGTCAAGAACCTTGGAATCATACAG
GATTGCCTTTTTCTATTAATATCACTCAAATTCAATTCATATATGTTTCC
TCTGGACTCTATTTTGAAAATTCCCCAGAATCCATCCATGTCTCTAATGC
TGTATGCCAGCCAATGTGCAAGTCCTCACTTGGCATTTCTTCTTCCCTGA
AGAAATAGCCTTACAGGCTCTATGTACTTCCAGACTTGCTTACCCACAGA
GAAAATAGCTGGGTTTGCCAATTTGCCAATTCTCCATACTTCAAAAGCTT
TCCTCTTTCCCCATATCAGTGGACAGAGGGCCACACCTCAGACATACTAG
GACATTGATTTCTAAGGGTCTTTACTTTTCTTGCCTTCTCCATCTTGGAC
TTGCTCTGCCCTGTTCATGTTTGATACTGACACAGTACCAGGTCTATAGA
AGAAGCTCAGAAAACACATGCTCAAAAGATGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_c14.b1 MSMg01no166_c14.b1 CHROMAT_FILE:
MSMg01no166_c14.b1 PHD_FILE: MSMg01no166_c14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:34 2005
         (220 letters)



>mm_chr5_39421714_39422333
          Length = 620

 Score =  393 bits (203), Expect = e-114
 Identities = 203/203 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatttcctagcctataaaatgttctggccttaaaatagccttctgctcctgtcct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatttcctagcctataaaatgttctggccttaaaatagccttctgctcctgtcct 264

                                                                       
Query: 65  cctctaggagggcacagctggttaagcttttctacttctctttgtgaaggcaagttcctt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cctctaggagggcacagctggttaagcttttctacttctctttgtgaaggcaagttcctt 324

                                                                       
Query: 125 cttgtccactcctgagtaccctgctatgccacatcctctggccaccttctcttttttgtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttgtccactcctgagtaccctgctatgccacatcctctggccaccttctcttttttgtt 384

                                  
Query: 185 gttgttgttgttgttgttgttgt 207
           |||||||||||||||||||||||
Sbjct: 385 gttgttgttgttgttgttgttgt 407


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 220
Length of database: 620
Length adjustment: 9
Effective length of query: 211
Effective length of database: 611
Effective search space:   128921
Effective search space used:   128921
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no166_c14.g1 MSMg01no166_c14.g1 CHROMAT_FILE:
MSMg01no166_c14.g1 PHD_FILE: MSMg01no166_c14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:34 2005
         (649 letters)



>mm_chr5_39589030_39590078
          Length = 1049

 Score =  801 bits (414), Expect = 0.0
 Identities = 423/426 (99%)
 Strand = Plus / Minus

                                                                        
Query: 224  ggattgcctttttctattaatatcactcaaattcaattcatatatgtttcctctggactc 283
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1049 ggattgcctttttctattaatatcactcaaattcaattcatatatgtttcttctggactc 990

                                                                        
Query: 284  tattttgaaaattccccagaatccatccatgtctctaatgctgtatgccagccaatgtgc 343
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 989  tattttgaaaattccccagaatccatccatgtctctaatgctgtatgccaaccaatgtgc 930

                                                                        
Query: 344  aagtcctcacttggcatttcttcttccctgaagaaatagccttacaggctctatgtactt 403
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929  aagtcctcacttggcatttcttcttccctgaagaaatagccttacaggctctatgtactt 870

                                                                        
Query: 404  ccagacttgcttacccacagagaaaatagctgggtttgccaatttgccaattctccatac 463
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869  ccagacttgcttacccacagagaaaatagctgggtttgccaatttgccaattctccatac 810

                                                                        
Query: 464  ttcaaaagctttcctctttccccatatcagtggacagagggccacacctcagacatacta 523
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 809  ttcaaaagctttcctctttccccatatcagtggacagagggccacgcctcagacatacta 750

                                                                        
Query: 524  ggacattgatttctaagggtctttacttttcttgccttctccatcttggacttgctctgc 583
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749  ggacattgatttctaagggtctttacttttcttgccttctccatcttggacttgctctgc 690

                                                                        
Query: 584  cctgttcatgtttgatactgacacagtaccaggtctatagaagaagctcagaaaacacat 643
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689  cctgttcatgtttgatactgacacagtaccaggtctatagaagaagctcagaaaacacat 630

                  
Query: 644  gctcaa 649
            ||||||
Sbjct: 629  gctcaa 624


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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