TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAAGTCCTATACCTGTGGAGCAGAACTGTTTCCATGGAACCATCT
CCACCACACTTGTGTGTTGATTTGATAAAATTAATTTATTTTAATGAAAG
CGGGGATGGCTATGAGAGGGATTGGGAAGAGAAAAGGGAAGAGAGAAAAT
GTTGTAAATAAATTATAATCTCAAAAAATCAAAAGTGCCCTCAAAAATTA
ATTTATCTTCCTAAAAACAGTTTTAAAGATTATTTTTATTACTACTATGT
ATGTTCCCCACCCATGTTTGTTTGTTTGTTTTTGTTTGCCGCCCCGCCCC
CCCCNCCNTTTTTGNGGTGCCCCTAAAACAAGAACCCCGTTTTTTTTTTT
TTATATTTTTTTTTTTCCCCCCCCAAAAAAAAAAAAAAAAATCTCGGGGG
GGGGGGGTGTCTTTTCCTCTCCCGTTTCCCCCTTTCTCTCTTTTTTTTTT
CCCCCCCCCCCTCTTTCTCCTTTCCTCCCCCCGTTTTTTTTTTCCCCCCC
TCCCTCCTTCTCTTCTTTTTTTCCCCCTTTCCCCCCCTTCTTTCTCCTTT
TTCTTTTCCCTCCCTCCTCCCCCCCCCTCCTTTTTTTCCCCCCCTCCCTT
CTTTTTCCTTTTTCCCCTCTCCCCCCCTCTTTTCTCCCCCTCCCCTTTTT
TCTCCTCCGGCCCCCCCTTCTTTTCTTCTTTCTGCGAAATATCCTCTCCC
CACCCCGTTTTTGTTTCACTCCCACCA

CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTACAGTTGCCACTGTGATCACTGA
AGTTGACAATTTTCTTCCCATCAAAATATTCCAAAGATTCATAAGAGTCA
GGCTTAGCAGAGACTCATACAGAACAGGGGAATCTGGTCTAGAGGAGGTC
CTAGATTCAGCTGTGTCAGGTGTGTGTCTCTCAGCTGTCAATGACTTATC
AGAAAATGCTTCTGATACCTGGAAAAAGTACTCCAGCAAAGCCTCCAAAG
GTATCAGATGGTGGATATTCAGTTATAACTACGCAGACAGGAAGCAATAC
CTCAGCTGTAACTGTCCAGACAGGAAGCAATACCTCAGAGTTAACTATCC
AGACAGGAAGTAATAGACACCCCTGCATTGCTGCTGTTGGCTCTGATTTC
TTCCACTTTTTTGAATTTAATTCTTGTTCACATACAATCTACAAAATATT
TTTGTCACTTTTTAATAAACTGCTATTTCTACTCACTCCTACACTTAACA
AAGCTTAGGATATATTTCATGTTACCAATCATTTTGCTGTCAGTATTTTT
TTTTGCTAAACACTCTAAAGTTTAATGTCATCGTCTCATTCAACTTTGTT
TCATCACCAATAACAGAGTAGAACCGCATCAAGAGAATAGTTTCTTTATG
AAGAGATCATAATTTCTGG

Query= MSMg01no166_i24.g1 MSMg01no166_i24.g1 CHROMAT_FILE:
MSMg01no166_i24.g1 PHD_FILE: MSMg01no166_i24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:06 2005
         (640 letters)



>mm_chr5_16807277_16808316
          Length = 1040

 Score =  814 bits (421), Expect = 0.0
 Identities = 515/589 (87%), Gaps = 66/589 (11%)
 Strand = Plus / Minus

                                                                        
Query: 117  agaggaggtcctagattcagctgtgtcaggtgtgtgtctctcagctgtcaatgacttatc 176
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1040 agaggaggtcctagattcagctgtgtcaggtgtgtgtctctcagctgtcaatgacttatc 981

                                                                        
Query: 177  agaaaatgcttctgatacctggaaaaagtactccagcaaagcctccaaaggtatcagatg 236
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 980  agaaaatgcttctgatacctggaaaaagtactccagcaaagcctccaaaggtatcagatg 921

                                                                        
Query: 237  gtggatattcagttataactacgcagacaggaagcaatacctcagctgtaact------- 289
            |||||||||||||||||||||||||||||||||||||||||||||||||||||       
Sbjct: 920  gtggatattcagttataactacgcagacaggaagcaatacctcagctgtaactttccaga 861

                                                                        
Query: 290  ----------------------------------------------------gt------ 291
                                                                ||      
Sbjct: 860  caggaagcaatacctcagagttaactacccagacaggaagtaatacctcagagttaacta 801

                                                                        
Query: 292  -ccagacaggaagcaatacctcagagttaactatccagacaggaagtaatagacacccct 350
             |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 800  cccagacaggaagcaatacctcagagttaactacccagacaggaagtaatagacacccct 741

                                                                        
Query: 351  gcattgctgctgttggctctgatttcttccacttttttgaatttaattcttgttcacata 410
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 740  gcattgctgctgttggctctgatttcttccacttttttgaatttaattcttggtcacata 681

                                                                        
Query: 411  caatctacaaaatatttttgtcactttttaataaactgctatttctactcactcctacac 470
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680  caatctacaaaatatttttgtcactttttaataaactgctatttctactcactcctacac 621

                                                                        
Query: 471  ttaacaaagcttaggatatatttcatgttaccaatcattttgctgtcagtattttttttt 530
            ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||
Sbjct: 620  ttaacaaagcttaggatatatttcatgttaccaatcattttgctgtcggtaatttttctt 561

                                                                        
Query: 531  gctaaacactctaaagtttaatgtcatcgtctcattcaactttgtttcatcaccaataac 590
            |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 560  gctaaacactctaaagtttaatgtcatcttctcattcaactttggttcatcaccaataac 501

                                                             
Query: 591  agagtagaaccgcatcaagagaatagtttctttatgaagagatcataat 639
            |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 500  agagtagaaccgcatcaagagaatagtttctttatgaagagatcgtaat 452


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space:   648900
Effective search space used:   648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)