Query= MSMg01no166_m23.b1 MSMg01no166_m23.b1 CHROMAT_FILE:
MSMg01no166_m23.b1 PHD_FILE: MSMg01no166_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:25 2005
(372 letters)
>mm_chr5_107005780_107006551
Length = 772
Score = 692 bits (358), Expect = 0.0
Identities = 364/366 (99%)
Strand = Plus / Plus
Query: 5 gaattctgcatgaagtgcaaataaagaaagcaagccgggcaccagagctcactcggtccc 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgcatgaagtgtaaataaagaaagcaagccgggcaccagagctcactcggtccc 264
Query: 65 ggtcccggcaagctgggaggttgaggcaggagaaaccagttagtagccaatctggacaac 124
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggtccccgcaagctgggaggttgaggcaggagaaaccagttagtagccaatctggacaac 324
Query: 125 aaagtgaattccaggccagcctgggatgacatattttctgtgttggggtgggggccaaga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaagtgaattccaggccagcctgggatgacatattttctgtgttggggtgggggccaaga 384
Query: 185 atgaacaaacaactaaacagctacttgcaaaagaaagcttcagtggaaaagtctgggata 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atgaacaaacaactaaacagctacttgcaaaagaaagcttcagtggaaaagtctgggata 444
Query: 245 tttcctgggaatgtctcctctcctttctttcccagttctaggatttcttcttcagagtta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttcctgggaatgtctcctctcctttctttcccagttctaggatttcttcttcagagtta 504
Query: 305 tcacctgctatacgcccacagcaccttagccaaggtcagtaacagctactatgctgggga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcacctgctatacgcccacagcaccttagccaaggtcagtaacagctactatgctgggga 564
Query: 365 gaggaa 370
||||||
Sbjct: 565 gaggaa 570
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space: 276969
Effective search space used: 276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no166_m23.g1 MSMg01no166_m23.g1 CHROMAT_FILE:
MSMg01no166_m23.g1 PHD_FILE: MSMg01no166_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:25 2005
(480 letters)
>mm_chr5_107172757_107173636
Length = 880
Score = 673 bits (348), Expect = 0.0
Identities = 375/390 (96%), Gaps = 12/390 (3%)
Strand = Plus / Minus
Query: 97 ttttatattcagagttgagaacagtgttaagtctacaaacaaacaaacaagcaaacaaac 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 ttttatattcagagttgagaacagtgttaagtctacaaacaaacaaacaagcaaacaaac 821
Query: 157 aactgaccatagcaggtttcatatctcctgggtctggacttacatgtggtcgtgaggtgc 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 aactgaccatagcaggtttcatatctcctgggtctggacttacatgtggtcgtgaggtgc 761
Query: 217 ctggcatgagtgctgggtttgaaccaggtcctctgtatgcaaagtgcacactcctaacct 276
|||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 760 ctggcatgggtgctgggtttgaaccaggtcctctatatgcaaagtgaacactcctaacct 701
Query: 277 ctgagccagctctgcagcccagcctggccaggatctagtggctttgttgctgtgttaacc 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 ctgagccagctctgcagcccagcctggccaggatctagtggctttgttgctgtgttaacc 641
Query: 337 tga----ccccccc--ctctgctgtgttttctggttgcattgttatgcatacaccatgct 390
||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 tgatggg------cttctctgctgtgttttctggttgcattgttatgcatacaccatgct 587
Query: 391 tcctaaaaatgagcacttttccccctttctccttctccttccaatttagaaagttttaaa 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 tcctaaaaatgagcacttttccccctttctccttctccttccaatttagaaagttttaaa 527
Query: 451 gggttgtaagagctgaaggttcatagagaa 480
||||||||||||||||||||||||||||||
Sbjct: 526 gggttgtaagagctgaaggttcatagagaa 497
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space: 408900
Effective search space used: 408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
