BAC Information

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BAC

Clone NameMSMg01-166N13
Chromosome5 (Build37)
Map Location 85,748,845 - 85,934,466
singlet/doubletdoublet
Overlap genenone
Upstream geneEpha5
Downstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166N13.T7 (MSMg01no166_n13.b1)MSMg01-166N13.TJ (MSMg01no166_n13.g1)
ACCAG364543AG364544
length755751
length of high quality
(start - end)		176 (73 - 248)342 (78 - 419)
definitionCHROMAT_FILE: MSMg01no166_n13.b1 PHD_FILE: MSMg01no166_n13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:28 2005CHROMAT_FILE: MSMg01no166_n13.g1 PHD_FILE: MSMg01no166_n13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,748,845 - 85,749,020)(85,934,128 - 85,934,466)
sequence
CAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTGCAAACTGAGGGCTTGGAATACACCTATACCTC
CACACTTCACAATAAAGCAAATTCATCTCTTCCATTCCCTCTGTTGACTG
AACAGTTGGCTCAAGATTAATATATTCTGTCAAATCAGGCAGTTTGAGCT
TTTCCTGCATGGTCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
ACCTCCTCCTACTCCTCCTGTCTCCACATCTCCATCTTCATTTTGCACTG
GGGCTATGAGAACTTGAAACCACTTTTTTTTCATAGTGCCAGAGCAGGTC
AAAGAACTGCTTTCNATTCCCGCCANAACAGNACCCCATNNATAAGAAAC
TTAATCTTAGGAATTTTCCCCCCCACAAANTAATAAAAAGCNCTGGTAGG
TGGTGGTTTTGGCCATATTCTAGGATTGTTTTACTTATAATATTTTTTAA
TTTATTCTCTTATCAACTTCCTATTACTATATTGACAAGAATCATAGCTA
TAGGAAAAAAAAAGAAATCAATCATTTTAGATCACTTCTGTTTTGGTTGC
TTACATTTTCATAGGTTTATTTAACAATCTTTATACTCCCGGGACCATTT
TTTTTAAACTTTTAATTTTATTTCCTCCTCCCACCAATTACATTTATTTT
TTCTCATTTATTAAAAGCAACACCCTACACAACACTATATTCAACAAATT
TATTT

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAAAAGCCACACAAAGACCAT
TTGAGAGCTTTGTAAAGTGTGAAAAATTAGATTGCAGAATTGCAGAAGTG
TTTCATGTATCTGTTGAAAACTCCTTTGCTGTTTCTATAATTGCTAGTAT
TCCATCTGTTTTCCAGCCATGAAATCATTTCAGAAACAACATAGGCTCCT
CACCCCCAAATTACCTCTCCTTAATTCTCTGTCATTTCATGAAGTCTCTG
TTAATATGTATTTCAATTATAACTATCTCTTCAAGTTGACCTCCATGTAA
ACTAGAACAGTTAGGGAGAGAGAGGAAGGACATTCTGGGAGGTCTGGAGA
GACAAATTAACTTGCTCCCCCCCCCTCATAGNCAGAAGAGTAAATATTAT
AATCACTTTAAATATTAACTACTAGTAATAATCATATCTAGTTAGAAATA
AGTTTAACCTGTAATCAAATACTCACTAAATACGTTAACTTAAAATTAAT
TTCATGCAATAGTGTTTCTAGTAATATTATAACAAGAATAAATTCCATGA
ATTTATGAAATTCTAACAAATGTAATATTATATGAAATATTAATATACGA
ACAATATTTTTGAAACTGTGTCTTTGGTAATGGTATTCGGTTCTATCTTT
CATAATTTTTTTCCCTCCATTTATATTTTCGTATTTCTTCCCTTCGCGTC
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_n13.b1 MSMg01no166_n13.b1 CHROMAT_FILE:
MSMg01no166_n13.b1 PHD_FILE: MSMg01no166_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:28 2005
         (176 letters)



>mm_chr5_85748645_85749220
          Length = 576

 Score =  325 bits (168), Expect = 1e-93
 Identities = 174/176 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgagggcttggaatacacctatacctccacacttcacaataaagcaaattcatctcttc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 ctgagggcttggaatacacctatacctccacacttcacaataaagcaaattcatttcttc 260

                                                                       
Query: 61  cattccctctgttgactgaacagttggctcaagattaatatattctgtcaaatcaggcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cattccctctgttgactgaacagttggctcaagattaatatattctgtcaaatcaggcag 320

                                                                   
Query: 121 tttgagcttttcctgcatggtctcttcctcctcctcctcctcctcctcctcctcct 176
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgagcttttcctgcatggtatcttcctcctcctcctcctcctcctcctcctcct 376


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 176
Length of database: 576
Length adjustment: 8
Effective length of query: 168
Effective length of database: 568
Effective search space:    95424
Effective search space used:    95424
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no166_n13.g1 MSMg01no166_n13.g1 CHROMAT_FILE:
MSMg01no166_n13.g1 PHD_FILE: MSMg01no166_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:28 2005
         (342 letters)



>mm_chr5_85933928_85934669
          Length = 742

 Score =  648 bits (335), Expect = 0.0
 Identities = 338/339 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaaaagccacacaaagaccatttgagagctttgtaaagtgtgaaaaattagattgcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 cagaaaagccacacaaagaccatttgagagctttgtaaagtgtgaaaaattagattgcag 480

                                                                       
Query: 61  aattgcagaagtgtttcatgtatctgttgaaaactcctttgctgtttctataattgctag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 aattgcagaagtgtttcatgtatctgttgaaaactcctttgctgtttctataattgctag 420

                                                                       
Query: 121 tattccatctgttttccagccatgaaatcatttcagaaacaacataggctcctcaccccc 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 419 tattccatctgttttccagccatgaaatcatttcagaaccaacataggctcctcaccccc 360

                                                                       
Query: 181 aaattacctctccttaattctctgtcatttcatgaagtctctgttaatatgtatttcaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 aaattacctctccttaattctctgtcatttcatgaagtctctgttaatatgtatttcaat 300

                                                                       
Query: 241 tataactatctcttcaagttgacctccatgtaaactagaacagttagggagagagaggaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tataactatctcttcaagttgacctccatgtaaactagaacagttagggagagagaggaa 240

                                                  
Query: 301 ggacattctgggaggtctggagagacaaattaacttgct 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 ggacattctgggaggtctggagagacaaattaacttgct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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