Query= MSMg01no167_c02.b1 MSMg01no167_c02.b1 CHROMAT_FILE:
MSMg01no167_c02.b1 PHD_FILE: MSMg01no167_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:49 2005
(549 letters)
>mm_chr5_6654972_6655920
Length = 949
Score = 1004 bits (519), Expect = 0.0
Identities = 537/543 (98%)
Strand = Plus / Minus
Query: 7 ggaattcataggttcccattcttgtcatccacccatttccctttgcttggactacaaggg 66
|||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 749 ggaattcataggggcagattcttgtcattcacccatttccctttgcttggactacaaggg 690
Query: 67 tgatctaagttcttaagaaactgttttaattactttttcactttaatgctgcacgtgtat 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 tgatctaagttcttaagaaactgttttaattactttttcactttaatgctgcacgtgtat 630
Query: 127 agaacgtatgatcagaagaggcttctgttcaatatacatgaatgcaactctgttcactca 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 agaacgtatgatcagaagaggcttctgttcaatatacatgaatgcaactctgttcactca 570
Query: 187 catcatatttaaatgccagggtatagagaaagtcggaaaatgtaggagaaaatgaacatc 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 catcatatttaaatgccagggtatagagaaagtcggaaaatgtaggagaaaatgaacatc 510
Query: 247 cctcaaaagatgtagtagtaataatgtaataattttaaaactctaagtttcattttttta 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 cctcaaaagatgtagtagtaataatgtaataattttaaaactctaagtttcattttttta 450
Query: 307 aaaaagataaccagcagtaacctgccacctctgggaatgggagaactgtcacatttcctt 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aaaaagataaccagcagtaacctgccacctctgggaatgggagaactgtcacatttcctt 390
Query: 367 tgaaaaatactcttttttgaagcacagaccaagtcaattcaattttattctgaagatttg 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tgaaaaatactcttttttgaagcacagaccaagtcaattcaattttattctgaagatttg 330
Query: 427 tttcataccagtcaataataattcaaacctgtctcccagaagcactgggtgtgaagagct 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tttcataccagtcaataataattcaaacctgtctcccagaagcactgggtgtgaagagct 270
Query: 487 agaaggtgctgtcatctgattttgtaacatcccggcatttctaaaaattgaatgcatatg 546
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 269 agaaggtgctgtcatctgattttgtaacatcctggcatttctaaaaattgaatgcatatg 210
Query: 547 aaa 549
|||
Sbjct: 209 aaa 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space: 506121
Effective search space used: 506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no167_c02.g1 MSMg01no167_c02.g1 CHROMAT_FILE:
MSMg01no167_c02.g1 PHD_FILE: MSMg01no167_c02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:49 2005
(513 letters)
>mm_chr5_6597887_6598799
Length = 913
Score = 924 bits (478), Expect = 0.0
Identities = 507/522 (97%), Gaps = 9/522 (1%)
Strand = Plus / Plus
Query: 1 agcatttatttgcttggtgacacacacatgaaaattccttccttctctgtacagctttga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcatttatttgcttggtgacacacacatgaaaattccttccttctctgtacagctttga 260
Query: 61 atttatcatccctttaaagctcatccagtctaactctgggtagatgtagacaattaaacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttatcatccctttaaagctcatccagtctaactctgggtagatgtagacaattaaacc 320
Query: 121 tttaattaagagtaatgacatggatggaatgccaaccatgtgctggagattctagagaat 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttaagtaagagtaatgacatggatggaatgccaaccatgtgctggagattctagagaat 380
Query: 181 atggcacaggtgcagcattttcagtccataaaaattccccatgaaagatgcattgctgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 atggcacaggtgcagcattttcagtccataaaaattccccatgaaagatgcattgttgtt 440
Query: 241 tctgttttggatgggatattgctaatacttattgaaggtttacaataagcagggcccaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctgttttggatgggatattgctaatacttattgaaggtttacaataagcagggcccaat 500
Query: 301 tttatgtaaaacgcatacattagattatttaaactataccaacatttctgaagtacgtat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttatgtaaaacgcatacattagattatttaaactataccaacatttctgaagtacgtat 560
Query: 361 gacatatgttaattaaggtctcttcaaaaaatgtatgaataagattaaaataatgcaggt 420
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 561 gacatatgttaattaaggtctcttcagaaaatgtatgaataagattaaaataatgcagtt 620
Query: 421 tttttttttta---------acaaaaaaataatgtccatgtacttacattggggtttggc 471
|||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 621 ttttttttttttttttttttacaaaaaaataatgtccatgtacttagattggggtttggc 680
Query: 472 cagagagttcatcttgagtgctaaaggaatgagagaaaatgt 513
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagagagttcatcttgagtgctaaaggaatgagagaaaatgt 722
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space: 454209
Effective search space used: 454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
