BAC Information

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BAC

Clone NameMSMg01-167I24
Chromosome5 (Build37)
Map Location 122,399,590 - 122,400,219
singlet/doubletsinglet
Overlap geneCutl2
Upstream geneRph3a, LOC665299, Ptpn11, Rpl6, LOC100039686, EG545802, AU042671, Trafd1, C330023M02Rik, Erp29, Tmem116, Adam1b, Adam1a, Mapkapk5, Aldh2, 9330129D05Rik, Acad10, Brap, Atxn2, Sh2b3, A230106M15Rik
Downstream geneLOC100042693, Myl2, Ccdc63, Ppp1cc, Hvcn1, Tect1, Pptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7, Atp2a2, Ift81, P2rx7, P2rx4, Camkk2, Anapc5, Rnf34, Fbxl10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-167I24.T7 (MSMg01no167_i24.b1)MSMg01-167I24.TJ (MSMg01no167_i24.g1)
ACCAG365002AG365003
length742761
length of high quality
(start - end)		597 (45 - 641)---
definitionCHROMAT_FILE: MSMg01no167_i24.b1 PHD_FILE: MSMg01no167_i24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:21 2005CHROMAT_FILE: MSMg01no167_i24.g1 PHD_FILE: MSMg01no167_i24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCTCTGGTTACCGTCTAGATGTTAGATATAAAGGCTTCTTGGTAG
AGGCCTATAGGTTGCAGGGCACAGAGAGGGAGCTCTTGGGTCCAGGGTAC
TGGCTTAAGAAGAGGCTACTCACATTGTGAACAGTGGAGGAAACTTCTTT
GCCTTTGACAACCAGGTGGGTGACAAAGACTTCTGGGTCAGAGGCCCCTG
TTCCCACACAAATGGCAGGGGACAGGTTACACTTGGGACACAGTAGAATA
CCAGAGTCTTCAGGCAAGCTGGCAACTAACAGGTGACTCAGCCCAGTGGA
GCTAGGACCCAGTGACACCATGAAGCCCTGGGATTGCCACCATGCAGATG
GGGAAACAGTGAGAAGTTTCCTGGGCCCACGGTCGCATGGTCCCACGGTC
ACGTGATCAGGGAACACCAAAGCTCAGGGCTGGCTAAGTCTCCACTCCGG
GTACCTCACATCTGTCTGTCCGTCTGTATTCACTTTAATCTTCCAGCCTC
TGCACCACACTGGGTATTGGTATGATGTCCCTTCTCCAGGCCCAGAGACA
CTGAAGCTCAGAGGGAGTAGTTTTTAAGTTGTGAGGGGCAGAGTTGGTTG
TTAAAGGGCAGTGTCTCTCCATTTTTTGGAGCCCCTACTGGGCTACTGCA
TAGCTCTGAATAAAGAGGGATTCCCACATACCTACACTCACC

GGGCGGCGGGCNNNNCCNNCCGGCCCCCNCCCCNNCNNCNNNNACCGATG
AAGTGGGAGGCCTGGNGGCGCCTGTTTCGGACNGNANNGANNNNNNGNNG
TTACAAAAAAAGGGGGGNNGNNGNNGGGNNNNGGNGNGNNNNGGGGGNNN
NNGGTTNCCCCCGNGGGGNGNGNNNNNGGGNNNNGAGNNGNGGNNNNGAG
NGGGGGGGNGNNGGGNNGNGNNGNNGNGNNGAAANNNNNNNNGNGGGGGG
GNNNNGGNNGGGNNNNGNGNNNNNNGGAGNNNNNGNNNGTTTTTTTGTGG
GNGGGGNTGGGANGGGAAGGGNNGGGNGNNNNNNNNGNNNNNNNNGNGGG
GTTTTTAATAGTTTTGGAGAGGGGGAGAGAGGGGAAGGAGGGGAGAAGGG
CCCCCCCCCCCCAGGAAGGGGAAGGAAGAAGAAGAAAAAAAAGAGGAGGA
CGACACAGAAAGAAGAAAAAGCACAAGGAGAACACGGACAAACAAAAACA
AGCAACACGAAAAGAAACCGGAAGAAAAAGGAGCGAAGGAAACAGCCGAC
GAGGGAACCGGGACGAAAGAACAACGAAAGCAGAGGAACGGCAAAAAGCC
GACCCCACAAAAAAACAAAAAAAGAAACGCACGAGCAAGACGAAGCGGGC
CGAAAGGGGAAAAAAGGCCGCCCCACAGAAAAGGGAAAAACATTTTTTTT
TTTTTTTGCACAAAACAAACACGCCGAATAGTTCCTTGAAATACCCGCAG
AGCACGTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no167_i24.b1 MSMg01no167_i24.b1 CHROMAT_FILE:
MSMg01no167_i24.b1 PHD_FILE: MSMg01no167_i24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:21 2005
         (597 letters)



>mm_chr5_122399423_122400419
          Length = 997

 Score = 1033 bits (534), Expect = 0.0
 Identities = 591/630 (93%), Gaps = 35/630 (5%)
 Strand = Plus / Plus

                                                                       
Query: 3   cggaattcttctctggttaccgtctagatgttagatataaaggcttcttggtagaggcct 62
           ||||||||||||||||  || |||||||||||||||||||||||||||||||||||||||
Sbjct: 168 cggaattcttctctggggacagtctagatgttagatataaaggcttcttggtagaggcct 227

                                                                       
Query: 63  ataggttgcagggcacagagagggagctcttgggtccagggtactggcttaagaagaggc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 ataggttgcagggcacagagagggagctcttgggtccagggtactggcttaagaagaggc 287

                                                                       
Query: 123 tactcacattgtgaacagtggaggaaacttctttgcctttgacaaccaggtgggtgacaa 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tactcacattgtgaacagtggaggaaacttctttgcctttgacaaccaggtgggtgacaa 347

                                                                       
Query: 183 agacttctgggtcagaggcccctgttcccacacaaatggcaggggacaggttacacttgg 242
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 348 agacttctgggtcagaggcccctgttcccacacaaatggcaggggacaggttccacttgg 407

                                                                       
Query: 243 gacacagtagaataccagagtcttcaggcaagctggcaactaacaggtgactcagcccag 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gacacagtagaataccagagtcttcaggcaagctggcaactaacaggtgactcagcccag 467

                                                                       
Query: 303 tggagctaggacccagtgacaccatgaagccctgggattgccaccatgcagatggggaaa 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tggagctaggacccagtgacaccatgaagccctgggattgccaccatgcagatggggaaa 527

                                                                       
Query: 363 cagtgagaagtttcctgggcccacggtcgcatggtcccacggtcacgtgatcagggaaca 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 cagtgagaagtttcctgggcccacggtcgcatggtcccacggtcacgtgatcagggaaca 587

                                                                       
Query: 423 ccaaagctcagggctggctaagtctccactccgggtacct--cacatctgtctgtccgt- 479
           ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| 
Sbjct: 588 ccaaagctcagggctggctaagtctccactccgggtaccttgcacatctgtctgtccgta 647

                                                                       
Query: 480 ----------ctgtattc---a---ct----------------ttaatcttccagcctct 507
                     ||||||||   |   ||                |||||||||||||||||
Sbjct: 648 ttctgtatgtctgtattctgtatgtctgtatgtctgtccgtatttaatcttccagcctct 707

                                                                       
Query: 508 gcaccacactgggtattggtatgatgtcccttctccaggcccagagacactgaagctcag 567
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 gcaccacactgggtattggtatgatgtcccttctccaggcccagagacactgaagctcag 767

                                         
Query: 568 agggagtagtttttaagttgtgaggggcag 597
           ||||||||||||||||||||||||||||||
Sbjct: 768 agggagtagtttttaagttgtgaggggcag 797


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space:   579369
Effective search space used:   579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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