BAC Information

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BAC

Clone NameMSMg01-168K18
Chromosome5 (Build37)
Map Location 39,882,701 - 39,883,071
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc2a9, Wdr1, 4930421P07Rik, 6820424L24Rik, Clnk, LOC384174
Downstream geneHs3st1, EG665839, LOC100040502
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168K18.T7 (MSMg01no168_k18.b1)MSMg01-168K18.TJ (MSMg01no168_k18.g1)
ACCAG365777AG365778
length1,1651,168
length of high quality
(start - end)
400 (44 - 443)371 (69 - 439)
definitionCHROMAT_FILE: MSMg01no168_k18.b1 PHD_FILE: MSMg01no168_k18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:05 2005CHROMAT_FILE: MSMg01no168_k18.g1 PHD_FILE: MSMg01no168_k18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNGGGGCATTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCACCTGAGGAATACCCATGGCTGAGAAGCACCTGAAAAAATGTTCA
GCATCCTTAATCATCAGGGAAATGCAAATCCAAACAACCCTGAGATTCCA
CCTCACATCAGTCAGAATGGCTAAGATCAAAACCTTCAGGTGAGAGCAGA
TGCTGGTGAGGATGTGAAGAAAGAGGAACACTCCTCCATTGTTGGTGGGA
TTGCAAGCTTATACAACCACTCTGGAAATCTGTCTGGCAGTTTCTCAGAA
AATTGGAATATTACTACTGGAGGATCTCGCAATACCTCTCCTGGGCATAT
ATCCAGAAGATGTTCCAACCGGTAAGAAGGACACATGCTCCACTATGTTC
TTAGTAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATTTTT
TTTTTCCCCCCCCCCCCATANAGAAAATGTGGTATAAAAAAAAAAGGGAG
TANTANTNAGTTATTAAAAAGAATGAATTTTATTTTAATGATTTTATTNA
GTAAAATNATGAATTTAAGTTTAAGAAGTTTTNTTATATTTTTGNTANAA
AGTTTTATGGATATGATTAATAAATTTTAGAAAAAAAGTTATTTTATGAG
ATGTATAAAATTTAATTGTGTAAGAATAGTTAAAGAATAGGATATAGAAT
ATATTTTAATAGTATNAGAGATTAAATTATATTTAAAGATGTTTGGTTAA
TTTTNTAATATGGTTATATTATTAATGTAATTATTTATAATATAATTTTT
ATAAAGTAATTTTTATTNTTTTTTTTTTTAGTTTTTTTTGTAAAAAAATG
GGAAGTTTGGATTTTATATTATATTTTATAGTTTTTTTTTATTTTTTGTT
GTATTTGTATTGTTGGTTTTTTTATTATTAATTTTTATTTATTTTTTTTA
TTGTTTTGGTTTATTTAATTTATAATTTTTTTTTTTTTGTATTTGTTTTT
ATATATTTTTTTTTTTATATATTTTTTTATTTTATTATTGTAATATTTTT
TTTTATTTTTTATTTTTATATATTTTATTAATTTTTTTATTGTATTTTTT
TTTTTTTTGTTTTTTATTATATGTTATTTTTTATATATTTTTTTTATTTA
ATTATATTTTTTATA
NNCCGGTGATGGTAGCGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCTCTGTGACTCTAAGGTGGTAGATTGTATTA
ATACCCCCATTTACAGTAGGTGAACCCCAGCAAGAGAGGTTGCCCTATGT
CTTCAAAAGCCCAGAAGTGCTGCATCTTAGTGATGGGCATCTGTATTCTG
CTTTTCCAGACAGTTCTCCTGGTTGTTTTCCAAACCACACAAAGCCCAGT
CCCTTGATGTGGTGACACTATCCTCTATAACTTGGCCCACATTTATCTGC
AAGTCTCCATTTTGACCTGTCTCTCTGGAATTTATGTTATTGGTTGCCAG
TTCTGCTCTCTCTTCTGGCATCCATGCTTTGGTTACTCATTTTTTTTTTC
TTCTTCTTGGGAAGCCTGGCTTCTTCTCTGGAAAAANACTTTTTTTTTTT
TCCCCCCCCCCCCCAAANANANNNGNCTCTAAAAAAAAAAAAAAGGGNNN
NGNNNNNNGNGNNNNNNNGGNNNNNGNNNGNNNNNNNNNNGNGGGNNNNN
NNNNNNNNGNNGNNNGNNNNGNNNNNGNNGNNNNNNNNNNGGGNNNNNNG
NNNGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGNGGGNGGGGNNGGGGGGGGGGGGGNGGGGGGGGGNNGGGG
GGGGGGGGGGGGNGNGGGGNGGGGGGGGNGGGGGGGGNGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGGGGNG
GGGGGGGGGNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGNNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGNNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGNGGNGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGGGGGGNNGGGG
GGGGGGNGGGGNGGGNNGGGGGGGGGGGGGGGGGGGGGGGGGNNGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNNGGGGG
GGGGGGGGGNNGGGGGGGGGGGGGGGGGGGGGGGNNGGGGGGGGGGGGGG
GGNGGGGGGGGGNGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_k18.g1 MSMg01no168_k18.g1 CHROMAT_FILE:
MSMg01no168_k18.g1 PHD_FILE: MSMg01no168_k18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:05 2005
         (371 letters)



>mm_chr5_39882504_39883274
          Length = 771

 Score =  673 bits (348), Expect = 0.0
 Identities = 365/371 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctctgtgactctaaggtggtagattgtattaatacccccatttacagtaggtgaacccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 568 tctctgtgactctaaggtggtagattgtattaatacccccatttacagtaggtgaaccaa 509

                                                                       
Query: 61  agcaagagaggttgccctatgtcttcaaaagcccagaagtgctgcatcttagtgatgggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 agcaagagaggttgccctatgtcttcaaaagcccagaagtgctgcatcttagtgatgggc 449

                                                                       
Query: 121 atctgtattctgcttttccagacagttctcctggttgttttccaaaccacacaaagccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 atctgtattctgcttttccagacagttctcctggttgttttccaaaccacacaaagccca 389

                                                                       
Query: 181 gtcccttgatgtggtgacactatcctctataacttggcccacatttatctgcaagtctcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gtcccttgatgtggtgacactatcctctataacttggcccacatttatctgcaagtctcc 329

                                                                       
Query: 241 attttgacctgtctctctggaatttatgttattggttgccagttctgctctctcttctgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 attttgacctgtctctctggaatttatgttattggttgccagttctgctctctcttctgg 269

                                                                       
Query: 301 catccatgctttggttactcattttttttttcttcttcttgggaagcctggcttcttctc 360
           ||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||
Sbjct: 268 catccatgctttggttactcattttgtttagcttcttcttgggaagcctggcttcttctc 209

                      
Query: 361 tggaaaaanac 371
           |||||||| ||
Sbjct: 208 tggaaaaacac 198


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space:   275844
Effective search space used:   275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)