BAC Information

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BAC

Clone NameMSMg01-169A07
Chromosome5 (Build37)
Map Location 130,654,152 - 130,654,427
singlet/doubletsinglet
Overlap genenone
Upstream geneGpr133, Sfrs8, Mmp17, EG620248, Zfp11, 1700016K13Rik, Mrps17, Gbas, Psph, Cct6a, LOC100038887, Sumf2, Phkg1, Chchd2, 2410018M08Rik, 4930579G22Rik, Vkorc1l1, Gusb, Asl, Crcp, Tpst1, Kctd7
Downstream geneRabgef1, 0610007L01Rik, EG625540, Sbds, Tyw1, A330070K13Rik, Caln1, Wbscr17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169A07.T7 (MSMg01no169_a07.b1)MSMg01-169A07.TJ (MSMg01no169_a07.g1)
ACCAG366024AG366025
length694812
length of high quality
(start - end)
272 (44 - 315)242 (125 - 366)
definitionCHROMAT_FILE: MSMg01no169_a07.b1 PHD_FILE: MSMg01no169_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:36 2005CHROMAT_FILE: MSMg01no169_a07.g1 PHD_FILE: MSMg01no169_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCACTCGTTTGCTATCCTTTCAGCCTATCTCCTGCTGGGATGTCAAC
CTTGTCCATCCATCCAAAACACACACACACACACACACACACACACACAC
ACACACACACACACACGCACACGATAATGCACATGGTTCTGACTGTCCGA
CACCATAAAATAAATCTATTCAAGGCATTTTCCAGACAGCACGAGATCAA
AGTATAAGCCGAAAAAATACTTGAGGGTATTAAGAGACTGTACAAGCTTA
TCTTAGCCATCTAATATTTTATCCTTGATTGAACTGTAAGATGGAAACTC
TTGGATCAAGTGANTACCCGTAGTCTAGGTCCACACANAANAGAGCACAC
AACCCTTCCAAAAGGCATGTGAAAAAAAAAAAACTGGGCTGAGGAGTTTC
TGATTACCTTTCAAGGCCACGAAACCATTATACTCCTTTCTCCACTGGCT
ACTAACAAGCAAAGCCACCTCTGTAGCTCTGGCCCGGACACTTCAGACGT
CAGCCAAGCACTTGGTACACAGCTGGCCCTTAATCCTCCAGTTCACTCTC
CATTTACTCTGAGTCGCTCAGACACTCATCTCCCTGTGTGTTACCAGCAG
CAGAGCAGGGTGGGCAAGCCCTTACAAGCCATTAAGAATCCTTT
ACGTATTTGCTACGTTTCTTCACCTTCCCGCCCCCCCCCCATTNNNNNCC
TCTATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTACTGCCTATGCCCCAGGATATGAGA
GCCGGGACAAGGCTCAGTGATACCCCAGAACACTTGCGTAGAGTCTCCCA
ATGATGGGCTGGGGGCGTGACTCAGCATAGAGCATTTGCCCTGCATGCAC
ACAGCCCAGGGTTCCAGCTCCAGCATCAGCAGGAGGAAAAAGGAGAATGT
CAGGCATAGGGATTTGGGCTAGGAGCCTGGGTTCCCAGGGGAATGGATGT
AGGGTGTGGCTTGTGACAGGTTATACTACCTTGTCCAACCCTTGCAGTAT
CTGCTGCATCTCTTTATATTTGAGACCGGTTGCTTTTTCCAGGCCCCTGC
TGTAGGCCTTGCTCCCCTGCACATCCACATTCAACAAATATCGGTCATAG
GAGGTAGATGAGTTGAACTTCTCCATGACGGTTTCGACGGCACCTCACAA
CCGGACATCCCATAGCTTCCCGTTCTGGGCTGGAAGACAGAACAAAACAG
ACTCTCAAAAGGTACCCTCTGAGAGAGTTATTCCAAAAAGGGCGTGGGCG
TCATTCGTCCCAACGCATTATTAACTTAATTCCCCACTGCGACTAAATAA
GGGCCACCTTGAAAACCCCAGAAGGCCTTTGGGACAAATTTGTGTGGAGT
TCTCGCTATGGGAATAAATTGGATACGAAAACTATTTTACTCCCACGGTC
TTTCTTTCTCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_a07.b1 MSMg01no169_a07.b1 CHROMAT_FILE:
MSMg01no169_a07.b1 PHD_FILE: MSMg01no169_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:36 2005
         (272 letters)



>mm_chr5_130653823_130654494
          Length = 672

 Score =  484 bits (250), Expect = e-141
 Identities = 266/276 (96%), Gaps = 8/276 (2%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctcactcgtttgctatcctttcagcctatctcctgctgggatgtcaaccttgtc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ggaattctcactcgtttgctatcctttcagcctatctcctgctgggatgtcaaccttgtc 546

                                                                       
Query: 64  catccatccaaa--------acacacacacacacacacacacacacacacacacacacac 115
           ||||||||||||        ||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 catccatccaaaacacacacacacacacacacacacacacacacacacacacacacacac 486

                                                                       
Query: 116 acacacacgcacacgataatgcacatggttctgactgtccgacaccataaaataaatcta 175
           |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 485 acacacacgcgcacgataatgcacatggttctgactgtccgacaccataaaatacatcta 426

                                                                       
Query: 176 ttcaaggcattttccagacagcacgagatcaaagtataagccgaaaaaatacttgagggt 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ttcaaggcattttccagacagcacgagatcaaagtataagccgaaaaaatacttgagggt 366

                                               
Query: 236 attaagagactgtacaagcttatcttagccatctaa 271
           ||||||||||||||||||||||||||||||||||||
Sbjct: 365 attaagagactgtacaagcttatcttagccatctaa 330


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 72
Number of extensions: 25
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space:   174369
Effective search space used:   174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)