BAC Information

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BAC

Clone NameMSMg01-169H24
Chromosome5 (Build37)
Map Location 36,309,865 - 36,310,177
singlet/doubletsinglet
Overlap geneAfap1
Upstream geneRgs12, Hgfac, Dok7, Lrpap1, Adra2c, Hmx1, Cpz, Plk-ps1, 2310079F23Rik, Acox3, Htra3, Sh3tc1, Ablim2, LOC100040209
Downstream geneSorcs2, 2310020A21Rik, Grpel1, Ccdc96, Tbc1d14, D5Ertd579e, LOC100040278, LOC100040825, Cno, Mrfap1, Man2b2, Ppp2r2c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169H24.T7 (MSMg01no169_h24.b1)MSMg01-169H24.TJ (MSMg01no169_h24.g1)
ACCAG366354AG366355
length745711
length of high quality
(start - end)
314 (44 - 357)71 (80 - 150)
definitionCHROMAT_FILE: MSMg01no169_h24.b1 PHD_FILE: MSMg01no169_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:12 2005CHROMAT_FILE: MSMg01no169_h24.g1 PHD_FILE: MSMg01no169_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTCTGTAACTTATTCCATGCTCCTAGGTGTTCTGTCTCTGGAAGGAT
TCCATGGGACCTGCTGGGTTCACTTGTTCCTGGAAAAGGAGCCTGGATGC
CCATTGCATTCTAAAAGGGTTTGTGTGTTGTCCCAAAGGACTGAAGGGTT
GCACTAGGTGTGTAGCGAGCGAGGTGATGCTGCATGGGTCTTGATGTAGA
ACTGCAGCCCAGGGAGGCTGTGTTCCAGTGGAGGAGACCCTTGGGAAAGC
CTCACACCCAGCTCTAGTTTGTGACATTCTTAAGAGACCGAGATGGGCTG
ACTAGTCNNNGTCGGTACCCGNACCCGAGNCCAAGGATCAGGTCCCTCAG
CTCCGAGTGGGCCCTTATGCATAAAAAAAAAAAAGACTGAGTCTCATGCT
GTGATTCAGCTCAACTCATGGATGAAACCTTGAGGGGAGGAGAGGGCTAC
ACATGTCTGAGTAAGAGCAAATTCAGGAAACCAGCTCACAGTCAGCTTCC
CTCTGTGGCCTGGTCTAGAGAGATGAGAACTGCCCTGTGCCAGAACCAGG
AGTCATTATCACTGGCATGGACTCTGCACCAAGGTACTGCATATGGGAGT
CCAGGATTTTCAGGTCTTCTGGTTTCTGCAGAAGACAATAGTTCTTATTG
TACAGTATGTTTCTAGGTTTATATGCTAACAGATCATTCCTAGCC
NAATGCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAACTCTGCTCTTCAAGCTTG
GTGGCAAGCCCTTTTGTGCACTGAGCCATCTCCCTGGTTTCTAGATTGAG
TCTGAGCTCCTGGGCCACACTCCCATGTTTCTGATCACGTGAGGCTGGGC
AATCCCTGTCTTCTGCAGAGGCTTTAGAAGTGACACTGGGCCAGGCGTGG
TGGTCCACGCCTTTAATCCCAGCACTTGGGAGGCAAAGGTAGGCGAATTT
CTGAGTTCGAAGCCAGCCTGGTCTACTTATTGTTTTCCAGGACAGCCAGG
GTTATACAGAGAAACCTTGACTGGATTTCCCCCCCCCCCCCCCTTTTTAT
TTTATGAGGTGATATTGGGTGAAGAAAACCTAAAAAATAAAATCAGCGAG
GGGGGGGTGGGGCTATCACACAGTTCCAGGGACTCGAGAAACCGCCTGTT
TCCCTCCAATAATCTGACAAACGAGTGATCCGAGCTGACAATCACGAAAT
AAGTGCTTTACAAAAGCCCCGCTGGTTTCCGAATTGATGACCGATTCGCC
CGCATTTGCGGAGGGCAACCCCCCCTCCTCCGGCATTGCAGTGGTTGACC
ACACCTATTCGCGATCCCACCTGACGACCCGCCGCTTCCCGCTCCCGGTC
GCTCCTCGCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_h24.b1 MSMg01no169_h24.b1 CHROMAT_FILE:
MSMg01no169_h24.b1 PHD_FILE: MSMg01no169_h24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:12 2005
         (314 letters)



>mm_chr5_36309662_36310379
          Length = 718

 Score =  551 bits (285), Expect = e-161
 Identities = 305/313 (97%), Gaps = 4/313 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttctgtaacttattccatgctcctaggtgttctgtctctggaaggattccatg 63
           |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttctgaaacttaatccatgctcctaggtgttctgtctctggaaggattccatg 263

                                                                       
Query: 64  ggacctgctgggttcacttgttcctggaaaaggagcctggatgcccattgcattctaaaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggacctgctgggttcacttgttcctggaaaaggagcctggatgcccattgcattctaaaa 323

                                                                       
Query: 124 gggtttgtgtgttgtcccaaaggactgaagggttgcactaggtgtgtagcgagcgaggtg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 324 gggtttgtgtgttgtcccaaaggactgaagggttgcactaggtgtgtagtgagcgaggtg 383

                                                                       
Query: 184 atgctgcatgggtcttgatgtagaactgcagcccagggaggctgtgttccagtggaggag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atgctgcatgggtcttgatgtagaactgcagcccagggaggctgtgttccagtggaggag 443

                                                                       
Query: 244 acccttgggaaagcctcacacccagctctag--tttg--tgacattcttaagagaccgag 299
           |||||||||||||||||||||||||||||||  | ||  |||||||||||||||||||||
Sbjct: 444 acccttgggaaagcctcacacccagctctagcatgtgactgacattcttaagagaccgag 503

                        
Query: 300 atgggctgactag 312
           |||||||||||||
Sbjct: 504 atgggctgactag 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 718
Length adjustment: 9
Effective length of query: 305
Effective length of database: 709
Effective search space:   216245
Effective search space used:   216245
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)