BAC Information

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BAC

Clone NameMSMg01-169M09
Chromosome5 (Build37)
Map Location 68,941,090 - 69,089,199
singlet/doubletdoublet
Overlap genenone
Upstream geneD830007B15Rik, Atp8a1, LOC100042458, EG330097, EG666977, AY616753
Downstream geneLOC666996, Kctd8, LOC545756, Yipf7, Guf1, Gnpda2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169M09.T7 (MSMg01no169_m09.b1)MSMg01-169M09.TJ (MSMg01no169_m09.g1)
ACCAG366539AG366540
length703688
length of high quality
(start - end)
272 (432 - 703)291 (75 - 365)
definitionCHROMAT_FILE: MSMg01no169_m09.b1 PHD_FILE: MSMg01no169_m09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:33 2005CHROMAT_FILE: MSMg01no169_m09.g1 PHD_FILE: MSMg01no169_m09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,088,929 - 69,089,199)(68,941,090 - 68,941,376)
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAAACCATTCGATGGCACATAAGTGTAGTCAAATGCACACATAGT
CACCCAGAGACAGATAAACACACAGTAAGTTAAAAAAAAAAAAAGACTGT
TTACTCATACACTAATAAGAAGGCTTTAAATATAAATATAGCTTACTTCC
ATAAGGGCACATATGCACATTTTGGAGCATTTTTAAGGCAAGACCTTAAA
ACATGAAACTAAATAAAAATAAGGTTATAGTAAAGATTAATATTTTAAAA
TATTTTTGGATTGTACTTTGAGTGAGCACTTTTCCCATTTTTCATTCTGT
CTACAATTGTTATTTTGCCCGGTACTTAACCCATGTATGAATACTTTTGA
TAAGGCAGATTAACGGGTTACATTTACACTGTGATTATCAATTATCACTA
GGATCTCTGAAATTACATGCTATTAAAAATCAGCAAGGGTCCTTTACAAT
CTCTTTGGTATGTCAGACACTTCCATTTTCTTCATTTTTATGGGTTTCAG
TTTCATAAACTTCAGTATCTTCACATTATCTCAAATGTCAATTAAGGTTC
AATAGTATCAGGCTCTAACACTTATGCATCCTTTCAATCGTTATCTAAGG
TTAGNTTTACTTTGTAGGTATTCTGAATTAAATTATTAAATACTTTTTTC
TAN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTAGACTGTGCATTGGTAAAAGGCTA
AAGCCTCTAGTCTAGAGAAATTAGAAGGTTTGAATCTACCAAAGAAATAC
TAATATGTAAGGTAAATACAAAGTTAAACTTTATTTTTACTGAGGCACAT
TAAAGAAATGTTAATTAACTGTCACACAGCTTTGGTTGAATAATATTGCT
TGTTCAGAAATTAAAAACAATGAATTAATGAAATTCTTGGGCAAATAGAT
GTATCTGGAGGATATCATCCTGAATGAGGTAACCCAATCACAAAAGAAGT
CACTTTATATGTTTTTTTTGACACCCGCCCCCCCCCCAGAAACTTAGAAT
ACCCAAGATATAATTTGCAAAACACAAGAAAATCAAGAAGAAGGAAGACC
AACGTGTAGATACTTCATTCCTCCTTAGAATAGGGAACAAAATACTCATG
GAAGGAGTTACAGAGACAAAGTTTGGAGCTAAGATGAAAGAATGGACCAT
CCAGAGACTACTCCACCTGGGGATCCATCCCATAATCAGCCACCAAATGC
AGACACCATTGCACATGCCAGCAAGATTTTGCTGAAAGGAGCCTGATATA
GCTGTCTCATGTGAGACTATGCCAGTGCTTGGCAAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_m09.b1 MSMg01no169_m09.b1 CHROMAT_FILE:
MSMg01no169_m09.b1 PHD_FILE: MSMg01no169_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:33 2005
         (272 letters)



>mm_chr5_69088729_69089400
          Length = 672

 Score =  511 bits (264), Expect = e-149
 Identities = 269/271 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgattatcaattatcactaggatctctgaaattacatgctattaaaaatcagcaagggtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tgattatcaattatcactaggatctctgaaattacatgctattaaaaatcagcaagggtc 412

                                                                       
Query: 61  ctttacaatctctttggtatgtcagacacttccattttcttcatttttatgggtttcagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 411 ctttacaatctctttggtatgtcagacacttccattttcttcatttttatgggcttcagt 352

                                                                       
Query: 121 ttcataaacttcagtatcttcacattatctcaaatgtcaattaaggttcaatagtatcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ttcataaacttcagtatcttcacattatctcaaatgtcaattaaggttcaatagtatcag 292

                                                                       
Query: 181 gctctaacacttatgcatcctttcaatcgttatctaaggttagntttactttgtaggtat 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 291 gctctaacacttatgcatcctttcaatcgttatctaaggttagttttactttgtaggtat 232

                                          
Query: 241 tctgaattaaattattaaatacttttttcta 271
           |||||||||||||||||||||||||||||||
Sbjct: 231 tctgaattaaattattaaatacttttttcta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space:   174369
Effective search space used:   174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no169_m09.g1 MSMg01no169_m09.g1 CHROMAT_FILE:
MSMg01no169_m09.g1 PHD_FILE: MSMg01no169_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:33 2005
         (291 letters)



>mm_chr5_68940890_68941580
          Length = 691

 Score =  547 bits (283), Expect = e-160
 Identities = 286/287 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagactgtgcattggtaaaaggctaaagcctctagtctagagaaattagaaggtttgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttagactgtgcattggtaaaaggctaaagcctctagtctagagaaattagaaggtttgaa 260

                                                                       
Query: 61  tctaccaaagaaatactaatatgtaaggtaaatacaaagttaaactttatttttactgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctaccaaagaaatactaatatgtaaggtaaatacaaagttaaactttatttttactgag 320

                                                                       
Query: 121 gcacattaaagaaatgttaattaactgtcacacagctttggttgaataatattgcttgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcacattaaagaaatgttaattaactgtcacacagctttggttgaataatattgcttgtt 380

                                                                       
Query: 181 cagaaattaaaaacaatgaattaatgaaattcttgggcaaatagatgtatctggaggata 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 cagaaattaaaaacaatgaattaatgaaattcttgggcaaacagatgtatctggaggata 440

                                                          
Query: 241 tcatcctgaatgaggtaacccaatcacaaaagaagtcactttatatg 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcatcctgaatgaggtaacccaatcacaaaagaagtcactttatatg 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)